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SRR1747046_scaffold_4_prodigal-single.1__X__X__00131
Bact-VirSRR1747046_scaffold_4_prodigal-single.1__X__X__00131
Identity
- Kingdom:
- phage
Quality
77.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 41-128
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.67 | 54.0 | 4.54e-01 | 87.5% | 98.0% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 40.0 | 4.49e-01 | 87.5% | 80.6% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.65 | 54.0 | 4.82e-01 | 93.2% | 87.6% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.64 | 45.0 | 4.10e-01 | 80.7% | 55.1% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.63 | 45.0 | 3.04e-01 | 75.0% | 62.0% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.62 | 42.0 | 3.64e-01 | 71.6% | 92.3% |
| 6qm7N00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.60 | 48.0 | 3.58e-01 | 85.2% | 71.6% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.59 | 45.0 | 3.59e-01 | 81.8% | 79.7% |
| 1z94B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 45.0 | 3.81e-01 | 80.7% | 66.4% |
| 6eufA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 47.0 | 3.30e-01 | 89.8% | 86.0% |
| 2ecfA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.57 | 44.0 | 2.86e-01 | 84.1% | 89.3% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 45.0 | 3.25e-01 | 88.6% | 50.0% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.57 | 48.0 | 3.13e-01 | 94.3% | 80.3% |
| 7erlA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 47.0 | 3.88e-01 | 97.7% | 86.0% |
| 3rf9B02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 41.0 | 2.86e-01 | 76.1% | 94.4% |
| 3v0aB03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 46.0 | 3.53e-01 | 89.8% | 51.7% |
| 1y7bA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 47.0 | 3.66e-01 | 97.7% | 75.6% |
| 3kn6A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 32.0 | 3.58e-01 | 72.7% | 76.9% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 42.0 | 2.73e-01 | 87.5% | 28.4% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.53 | 41.0 | 3.76e-01 | 84.1% | 66.7% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.53 | 44.0 | 3.80e-01 | 95.5% | 89.0% |
| 3pveA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 3.39e-01 | 89.8% | 57.7% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.52 | 38.0 | 3.88e-01 | 79.5% | 89.8% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 39.0 | 3.51e-01 | 86.4% | 55.6% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.51 | 40.0 | 3.07e-01 | 87.5% | 53.0% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4610051 | 295.1.1.43 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF29940 | 0.72 | 51.0 | 4.00e-01 | 73.9% | 56.7% |
| 3704328 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.72 | 51.0 | 5.28e-01 | 77.3% | 78.3% |
| 3701925 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.72 | 52.0 | 4.69e-01 | 76.1% | 56.7% |
| 3609492 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.71 | 53.0 | 4.48e-01 | 78.4% | 55.7% |
| 3224967 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.70 | 50.0 | 3.57e-01 | 80.7% | 25.9% |
| 5054384 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.69 | 43.0 | 4.81e-01 | 77.3% | 80.0% |
| 3224579 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.69 | 48.0 | 3.22e-01 | 75.0% | 20.4% |
| 3813951 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.68 | 59.0 | 4.91e-01 | 95.5% | 81.3% |
| 3621363 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.68 | 50.0 | 3.47e-01 | 77.3% | 62.8% |
| 3242312 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.68 | 51.0 | 3.49e-01 | 78.4% | 58.3% |
| 4032202 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.68 | 52.0 | 4.10e-01 | 80.7% | 72.0% |
| 4956163 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.67 | 48.0 | 3.83e-01 | 80.7% | 37.2% |
| 3233897 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 47.0 | 4.24e-01 | 75.0% | 54.2% |
| 3248667 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.67 | 50.0 | 3.84e-01 | 78.4% | 94.2% |
| 3432311 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.66 | 57.0 | 4.70e-01 | 95.5% | 80.6% |
| 4302456 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.66 | 45.0 | 4.51e-01 | 80.7% | 68.9% |
| 5011042 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.66 | 51.0 | 4.53e-01 | 84.1% | 63.1% |
| 3218903 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.66 | 46.0 | 3.48e-01 | 80.7% | 30.5% |
| 4408461 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.65 | 47.0 | 3.71e-01 | 76.1% | 37.2% |
| 5068881 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.65 | 54.0 | 3.48e-01 | 92.0% | 40.5% |
| 3239992 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.64 | 46.0 | 3.61e-01 | 75.0% | 57.3% |
| 4992060 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.64 | 50.0 | 3.97e-01 | 83.0% | 93.1% |
| 3733356 | 298.1.1.25 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › ox_reductase_C | 0.64 | 44.0 | 3.63e-01 | 71.6% | 46.1% |
| 3951220 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.64 | 52.0 | 3.48e-01 | 88.6% | 73.4% |
| 3546306 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.64 | 45.0 | 4.44e-01 | 80.7% | 68.4% |
| 3536576 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.64 | 45.0 | 4.56e-01 | 80.7% | 75.3% |
| 3242479 | 2484.1.1.190 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 | 0.64 | 47.0 | 3.28e-01 | 78.4% | 24.2% |
| 3286900 | 5.1.4.29 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 | 0.62 | 48.0 | 3.34e-01 | 84.1% | 71.9% |
| 4078385 | 5.1.3.20 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 | 0.62 | 45.0 | 2.98e-01 | 77.3% | 41.3% |
| 363009 | 5.1.3.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 | 0.62 | 47.0 | 3.17e-01 | 80.7% | 42.2% |
| 3740081 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.61 | 42.0 | 3.92e-01 | 70.5% | 74.5% |
| 4121572 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.61 | 49.0 | 3.32e-01 | 88.6% | 47.0% |
| 5019409 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.61 | 47.0 | 3.23e-01 | 83.0% | 57.8% |
| 3529020 | 79.1.1.33 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › BRICHOS | 0.60 | 47.0 | 4.02e-01 | 83.0% | 87.4% |
| 3211631 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 44.0 | 3.16e-01 | 81.8% | 26.4% |
| 4003103 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.59 | 46.0 | 3.90e-01 | 83.0% | 72.4% |
| 3867103 | 3417.1.1.1 ↗ | a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS | 0.58 | 47.0 | 4.43e-01 | 86.4% | 82.9% |
| 5084037 | 10.1.1.22 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 | 0.57 | 48.0 | 3.67e-01 | 94.3% | 80.8% |
| 3802876 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.57 | 43.0 | 2.99e-01 | 81.8% | 47.0% |
| 5014023 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.56 | 43.0 | 3.39e-01 | 80.7% | 91.8% |
| 3217506 | 9.1.1.50 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 | 0.56 | 40.0 | 3.68e-01 | 76.1% | 92.5% |
| 3587661 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.56 | 48.0 | 2.87e-01 | 97.7% | 41.4% |
| 3827973 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.55 | 43.0 | 2.98e-01 | 85.2% | 61.6% |
| 4934442 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.55 | 42.0 | 3.53e-01 | 80.7% | 92.7% |
| 5044469 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.55 | 38.0 | 3.33e-01 | 71.6% | 95.4% |
| 5015520 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.54 | 41.0 | 3.16e-01 | 81.8% | 91.9% |
| 3690104 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.53 | 42.0 | 3.57e-01 | 86.4% | 83.3% |