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SRR1747046_scaffold_4_prodigal-single.1__X__X__00145

Bact-Vir

SRR1747046_scaffold_4_prodigal-single.1__X__X__00145

Identity

Kingdom:
phage

Quality

57.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-44_65-220
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 24.0 3.17e-01 85.0% 69.9%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 29.0 3.60e-01 83.2% 80.4%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.52 22.0 3.41e-01 79.6% 100.0%
2cuhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 28.0 3.64e-01 85.6% 95.5%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 29.0 3.17e-01 87.4% 68.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3909461 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 28.0 3.69e-01 82.6% 94.4%
D2 high residues 227-390
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.67 25.0 3.98e-01 92.7% 87.7%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 23.0 3.51e-01 92.7% 87.9%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.75e-01 93.9% 93.8%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 24.0 3.27e-01 95.7% 82.1%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 24.0 3.03e-01 98.2% 74.2%
3s9dD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.65e-01 94.5% 95.8%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 30.0 3.74e-01 93.3% 96.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926677 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 28.0 3.69e-01 94.5% 87.8%
3164576 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.54 26.0 3.04e-01 99.4% 62.4%
3819067 386.1.1.207 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 0.51 18.0 2.88e-01 84.1% 80.0%
5012268 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.50 23.0 2.90e-01 74.4% 69.5%
3236272 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 29.0 3.56e-01 94.5% 89.5%
D3 high residues 700-789
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.60 42.0 4.21e-01 74.4% 71.4%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 46.0 4.54e-01 85.6% 88.3%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 40.0 3.78e-01 73.3% 99.1%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 45.0 4.35e-01 87.8% 87.3%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 40.0 3.03e-01 73.3% 43.5%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 4.30e-01 95.6% 84.7%
8e7cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 40.0 4.18e-01 80.0% 82.7%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.56 43.0 4.28e-01 85.6% 80.2%
1g8kA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.55 40.0 3.47e-01 74.4% 58.5%
2e7zA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.55 38.0 3.22e-01 72.2% 59.0%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 38.0 3.70e-01 73.3% 69.8%
1loxA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.55 44.0 4.15e-01 93.3% 73.0%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 4.34e-01 87.8% 98.9%
2h6oA01 2.60.40.2800 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.77e-01 88.9% 87.9%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.87e-01 95.6% 80.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 33.0 3.83e-01 77.8% 87.3%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 43.0 4.15e-01 87.8% 91.3%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 4.40e-01 91.1% 89.4%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 36.0 3.55e-01 71.1% 96.0%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 37.0 3.54e-01 81.1% 61.5%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 4.08e-01 86.7% 87.0%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.52 43.0 4.02e-01 95.6% 74.3%
2cjsA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 43.0 3.71e-01 95.6% 79.1%
2yrlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.65e-01 90.0% 77.1%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 34.0 3.57e-01 74.4% 73.8%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.46e-01 73.3% 80.6%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.51 36.0 3.15e-01 73.3% 78.2%
1y00A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.51 29.0 3.33e-01 90.0% 80.3%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.51 32.0 3.02e-01 73.3% 50.5%
4iykA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.51 37.0 3.75e-01 87.8% 77.2%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.99e-01 75.6% 98.6%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 38.0 3.52e-01 81.1% 76.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4125814 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 43.0 4.72e-01 74.4% 72.0%
4883586 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 46.0 4.72e-01 75.6% 68.6%
4245518 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 43.0 4.66e-01 75.6% 73.3%
4338601 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 42.0 4.26e-01 74.4% 60.0%
4072878 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 44.0 4.68e-01 74.4% 72.5%
4066146 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 43.0 4.10e-01 74.4% 53.3%
4518787 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 43.0 4.73e-01 74.4% 76.0%
4060488 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 42.0 4.49e-01 75.6% 68.8%
4080130 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 43.0 4.69e-01 75.6% 76.0%
5026244 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 45.0 4.52e-01 72.2% 77.8%
5015822 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.63 45.0 4.19e-01 73.3% 80.0%
3267585 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 4.78e-01 81.1% 91.4%
3972951 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.63 42.0 4.55e-01 74.4% 82.7%
3586034 274.1.1.38 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pecanex_C 0.62 44.0 3.29e-01 74.4% 53.3%
5079674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.62 38.0 4.10e-01 72.2% 73.3%
4970796 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 43.0 4.15e-01 73.3% 80.0%
5001586 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 43.0 4.31e-01 73.3% 76.7%
5000763 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 41.0 4.15e-01 73.3% 70.0%
4947671 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 38.0 4.07e-01 70.0% 73.8%
3930882 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 41.0 4.06e-01 72.2% 70.5%
4953657 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 42.0 4.13e-01 75.6% 72.6%
3738494 11.2.1.70 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_Mug190_3rd 0.58 49.0 4.23e-01 96.7% 88.7%
5067107 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.58 40.0 4.17e-01 72.2% 76.5%
4059476 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 51.0 4.69e-01 100.0% 77.5%
3602123 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.58 42.0 4.47e-01 84.4% 91.0%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 35.0 3.97e-01 70.0% 80.0%
3824224 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.57 42.0 3.97e-01 96.7% 62.7%
5016579 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.57 42.0 4.44e-01 85.6% 91.1%
3176450 1.1.5.18 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.57 45.0 4.24e-01 86.7% 76.1%
3393006 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.56 45.0 4.17e-01 87.8% 71.3%
3725951 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 39.0 3.32e-01 72.2% 77.3%
4961202 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.56 42.0 4.29e-01 83.3% 87.8%
5069810 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.55 41.0 4.29e-01 83.3% 88.7%
3758536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 37.0 4.06e-01 70.0% 87.1%
4071075 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.55 44.0 4.21e-01 87.8% 80.0%
4218482 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.55 39.0 3.25e-01 74.4% 66.1%
1171020 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.55 43.0 4.30e-01 85.6% 86.5%
4944212 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 44.0 4.44e-01 87.8% 90.9%
3592095 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 47.0 4.17e-01 96.7% 90.2%
4945827 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 43.0 4.32e-01 86.7% 90.0%
3300074 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 32.0 3.96e-01 70.0% 100.0%
161224 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.54 42.0 4.14e-01 86.7% 82.0%
3612184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 33.0 3.86e-01 72.2% 90.0%
3698630 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.53 42.0 4.06e-01 86.7% 85.7%
3599398 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 42.0 4.10e-01 86.7% 83.0%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.53 33.0 3.64e-01 78.9% 78.6%
4932427 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.53 41.0 4.10e-01 83.3% 88.9%
5001596 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.53 41.0 4.15e-01 84.4% 87.8%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.53 32.0 3.78e-01 73.3% 96.4%
4668791 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.53 43.0 4.10e-01 91.1% 76.2%
3822850 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.53 42.0 4.09e-01 87.8% 91.0%
3709896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.82e-01 74.4% 90.6%
3688604 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.52 40.0 3.91e-01 87.8% 90.5%
3411873 11.1.1.624 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM131L_5 0.50 44.0 3.90e-01 96.7% 94.6%
D4 medium residues 45-64_398-472
PDB
D5 medium residues 504-558
PDB
D6 medium residues 577-647
PDB
D7 medium residues 648-699_793-864
PDB
D8 medium residues 865-926
PDB
D9 medium residues 978-1108
PDB