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SRR1747052_scaffold_19_prodigal-single.1__X__X__00016
Bact-VirSRR1747052_scaffold_19_prodigal-single.1__X__X__00016
Identity
- Kingdom:
- phage
Quality
63.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-59
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.65 | 44.0 | 3.81e-01 | 100.0% | 44.2% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.65 | 46.0 | 3.65e-01 | 97.9% | 35.2% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.64 | 49.0 | 4.23e-01 | 97.9% | 53.3% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.64 | 45.0 | 3.46e-01 | 83.3% | 32.4% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.62 | 41.0 | 3.83e-01 | 89.6% | 52.4% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 40.0 | 3.24e-01 | 91.7% | 33.3% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.61 | 43.0 | 4.40e-01 | 97.9% | 80.4% |
| 1c3gA01 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.60 | 42.0 | 3.70e-01 | 100.0% | 46.2% |
| 3akoD00 | 6.20.160.10 | Special › Other non-globular › HSP40/DNAj peptide-binding domain › | 0.60 | 40.0 | 3.56e-01 | 77.1% | 44.7% |
| 1fs7A01 | 1.10.1130.10 | Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A | 0.59 | 42.0 | 2.63e-01 | 79.2% | 33.0% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.59 | 47.0 | 4.05e-01 | 100.0% | 55.1% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.59 | 47.0 | 3.03e-01 | 100.0% | 42.1% |
| 4wjmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 45.0 | 2.87e-01 | 93.8% | 95.8% |
| 4hscX04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.57 | 41.0 | 3.28e-01 | 89.6% | 34.5% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 40.0 | 3.01e-01 | 89.6% | 29.9% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.55 | 40.0 | 3.67e-01 | 87.5% | 76.6% |
| 1qlbA04 | 3.10.20.820 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 42.0 | 3.52e-01 | 89.6% | 89.4% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 46.0 | 3.97e-01 | 100.0% | 75.6% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 39.0 | 2.60e-01 | 77.1% | 46.4% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.53 | 35.0 | 2.59e-01 | 91.7% | 21.0% |
| 1dt9A01 | 3.30.960.10 | Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 | 0.53 | 34.0 | 2.77e-01 | 77.1% | 27.6% |
| 7a6pB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 37.0 | 2.75e-01 | 91.7% | 26.1% |
| 3ua0A00 | 6.20.280.10 | Special › Other non-globular › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.53 | 45.0 | 3.88e-01 | 100.0% | 70.9% |
| 3n77A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 38.0 | 2.86e-01 | 100.0% | 28.4% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.13e-01 | 100.0% | 47.9% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.52 | 40.0 | 3.71e-01 | 91.7% | 65.2% |
| 1cp9B02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 40.0 | 3.57e-01 | 89.6% | 64.4% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.51 | 38.0 | 2.64e-01 | 83.3% | 56.2% |
| 2ijzA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.51 | 40.0 | 3.27e-01 | 97.9% | 43.9% |
| 2jzlA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.50 | 40.0 | 3.26e-01 | 100.0% | 85.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4004108 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.76 | 47.0 | 2.94e-01 | 72.9% | 12.0% |
| 3194238 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.68 | 56.0 | 3.53e-01 | 91.7% | 53.9% |
| 4001391 | 11.1.1.842 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C | 0.65 | 40.0 | 2.63e-01 | 91.7% | 14.1% |
| 3477515 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.65 | 42.0 | 3.22e-01 | 79.2% | 27.0% |
| 3960213 | 304.156.1.5 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 | 0.65 | 47.0 | 3.60e-01 | 79.2% | 67.8% |
| 3678985 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.64 | 54.0 | 4.33e-01 | 97.9% | 90.0% |
| 3273955 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.64 | 41.0 | 2.89e-01 | 85.4% | 19.4% |
| 3247288 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.63 | 51.0 | 3.36e-01 | 91.7% | 59.0% |
| 3303587 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.63 | 43.0 | 2.71e-01 | 70.8% | 37.7% |
| 4923851 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.63 | 52.0 | 3.71e-01 | 95.8% | 66.0% |
| 4983022 | 377.12.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 › Ribosomal_L34e | 0.63 | 44.0 | 3.71e-01 | 75.0% | 75.9% |
| 4399128 | 7581.1.1.30 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C | 0.63 | 40.0 | 2.38e-01 | 87.5% | 8.4% |
| 4023083 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.62 | 47.0 | 3.13e-01 | 83.3% | 32.1% |
| 4026370 | 4232.1.1.0 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 | 0.61 | 45.0 | 3.28e-01 | 83.3% | 38.7% |
| 3633076 | 1.1.1.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 | 0.60 | 42.0 | 3.40e-01 | 100.0% | 35.2% |
| 4160831 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.60 | 40.0 | 2.22e-01 | 79.2% | 4.7% |
| 3705042 | 230.5.1.2 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › MVP_shoulder | 0.60 | 46.0 | 3.95e-01 | 89.6% | 50.6% |
| 3356202 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 52.0 | 3.16e-01 | 100.0% | 96.6% |
| 3901459 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 50.0 | 2.80e-01 | 100.0% | 19.4% |
| 1031169 | 3709.1.1.1 ↗ | a+b two layers › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › T7SS_ESX1_EccB | 0.59 | 35.0 | 3.71e-01 | 83.3% | 65.1% |
| 5045478 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.58 | 42.0 | 2.70e-01 | 79.2% | 16.3% |
| 4944002 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 45.0 | 2.77e-01 | 91.7% | 14.6% |
| 4315154 | 3294.1.1.1 ↗ | alpha complex topology › FAS type I helical domain › FAS type I helical domain › FAS type I helical domain › FAS_I_H | 0.58 | 38.0 | 2.49e-01 | 95.8% | 16.1% |
| 3890428 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.57 | 40.0 | 2.80e-01 | 77.1% | 58.9% |
| 4021761 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 47.0 | 2.69e-01 | 97.9% | 19.0% |
| 4158399 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.56 | 38.0 | 2.63e-01 | 89.6% | 18.4% |
| 4883006 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.56 | 43.0 | 2.90e-01 | 91.7% | 54.2% |
| 3653800 | 377.12.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 › Ribosomal_L34e | 0.55 | 43.0 | 3.81e-01 | 97.9% | 61.2% |
| 3351840 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.55 | 36.0 | 3.26e-01 | 97.9% | 46.4% |
| 3624724 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.55 | 43.0 | 2.86e-01 | 100.0% | 20.0% |
| 3591474 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.55 | 45.0 | 3.00e-01 | 100.0% | 24.1% |
| 3450430 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 46.0 | 3.19e-01 | 100.0% | 34.9% |
| 3939157 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 2.51e-01 | 100.0% | 9.3% |
| 3719707 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 36.0 | 2.39e-01 | 87.5% | 13.5% |
| 3218156 | 389.1.1.145 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29138 | 0.53 | 37.0 | 3.83e-01 | 100.0% | 82.2% |
| 3972588 | 2498.1.1.31 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M90 | 0.53 | 42.0 | 2.76e-01 | 95.8% | 51.0% |
| 3688597 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.52 | 45.0 | 3.01e-01 | 100.0% | 28.7% |
| 3717300 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 43.0 | 2.53e-01 | 100.0% | 38.3% |
| 3522563 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.51 | 36.0 | 3.84e-01 | 79.2% | 100.0% |
| 4027366 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 43.0 | 2.53e-01 | 97.9% | 23.9% |
| 5057091 | 377.12.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 › Ribosomal_L34e | 0.51 | 42.0 | 3.25e-01 | 97.9% | 40.8% |