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SRR1747052_scaffold_19_prodigal-single.1__X__X__00046
Bact-VirSRR1747052_scaffold_19_prodigal-single.1__X__X__00046
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-71_99-224
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09704.16 best | Cas_Cas5d | 38.0 | 2.60e-09 | 63.3% | 52.1% |
| PF09704.16 | Cas_Cas5d | 57.5 | 2.80e-15 | 35.2% | 31.3% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4n77A00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.89 | 83.0 | 8.34e-01 | 100.0% | 95.4% |
| 5h9fJ00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.81 | 79.0 | 7.54e-01 | 100.0% | 99.1% |
| 3kg4A00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 60.0 | 6.20e-01 | 100.0% | 95.1% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.66 | 37.0 | 4.62e-01 | 83.7% | 89.0% |
| 4mjkA00 | 3.30.70.3120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 59.0 | 5.50e-01 | 100.0% | 90.8% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 22.0 | 2.89e-01 | 93.4% | 56.5% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.61 | 30.0 | 3.64e-01 | 83.2% | 69.5% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 29.0 | 4.05e-01 | 83.7% | 90.9% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 29.0 | 4.03e-01 | 82.1% | 97.8% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 33.0 | 4.26e-01 | 83.7% | 97.2% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 35.0 | 4.45e-01 | 78.6% | 100.0% |
| 1tz0B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 30.0 | 4.04e-01 | 84.2% | 96.9% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.57 | 35.0 | 3.85e-01 | 95.9% | 72.8% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 31.0 | 4.11e-01 | 83.7% | 99.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4877693 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.88 | 86.0 | 7.70e-01 | 100.0% | 85.5% |
| 2388895 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.85 | 83.0 | 7.57e-01 | 100.0% | 89.3% |
| 3980749 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.84 | 81.0 | 7.46e-01 | 100.0% | 98.3% |
| 1488213 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.82 | 79.0 | 7.56e-01 | 100.0% | 99.1% |
| 5032167 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.74 | 70.0 | 6.75e-01 | 100.0% | 98.2% |
| 4952413 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.72 | 62.0 | 6.44e-01 | 100.0% | 96.8% |
| 5077753 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.71 | 68.0 | 6.58e-01 | 100.0% | 97.7% |
| 4928785 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.71 | 68.0 | 6.43e-01 | 100.0% | 99.1% |
| 4996327 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.71 | 67.0 | 6.26e-01 | 100.0% | 97.1% |
| 4946705 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.70 | 67.0 | 6.16e-01 | 100.0% | 96.3% |
| 4200050 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.70 | 67.0 | 6.02e-01 | 100.0% | 97.6% |
| 5083656 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.70 | 67.0 | 6.46e-01 | 99.5% | 96.7% |
| 5075411 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.70 | 66.0 | 6.50e-01 | 100.0% | 99.0% |
| 4331348 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.70 | 66.0 | 6.10e-01 | 100.0% | 87.1% |
| 5021424 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.69 | 66.0 | 6.23e-01 | 100.0% | 92.2% |
| 4967166 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.69 | 66.0 | 6.07e-01 | 100.0% | 98.8% |
| 3078808 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.69 | 65.0 | 6.29e-01 | 100.0% | 91.5% |
| 4583752 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.68 | 65.0 | 6.39e-01 | 99.5% | 95.6% |
| 5071665 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.68 | 64.0 | 5.92e-01 | 100.0% | 98.0% |
| 4929253 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.68 | 65.0 | 6.15e-01 | 100.0% | 97.8% |
| 4093127 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.68 | 64.0 | 5.95e-01 | 100.0% | 92.5% |
| 4339550 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.65 | 33.0 | 4.58e-01 | 97.4% | 98.9% |
| 5013690 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.65 | 61.0 | 6.05e-01 | 100.0% | 98.5% |
| 5013703 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.65 | 61.0 | 5.88e-01 | 100.0% | 92.3% |
| 5077675 | 304.158.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs | 0.64 | 58.0 | 5.78e-01 | 95.9% | 97.1% |
| 4959045 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.63 | 40.0 | 4.50e-01 | 96.4% | 82.0% |
| 5017739 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.58 | 54.0 | 4.96e-01 | 99.0% | 92.4% |
| 3273461 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.57 | 36.0 | 3.93e-01 | 95.9% | 75.0% |
| 3192549 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.55 | 23.0 | 3.09e-01 | 81.1% | 71.4% |
| 4213848 | 4114.1.1.1 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › PP_kinase | 0.52 | 31.0 | 3.21e-01 | 99.0% | 61.1% |
| 4081561 | 304.8.1.50 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Rep_1 | 0.52 | 44.0 | 4.31e-01 | 100.0% | 83.8% |
| 4377632 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.51 | 34.0 | 4.04e-01 | 98.5% | 100.0% |