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SRR1747052_scaffold_19_prodigal-single.1__X__X__00047
Bact-VirSRR1747052_scaffold_19_prodigal-single.1__X__X__00047
Identity
- Kingdom:
- phage
Quality
93.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 63-177
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09344.16 best | Cas_CT1975 | 55.3 | 1.20e-14 | 100.0% | 30.6% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 39.0 | 4.15e-01 | 96.5% | 73.8% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 32.0 | 3.70e-01 | 93.0% | 75.3% |
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 35.0 | 4.14e-01 | 81.7% | 96.1% |
| 1xmcB03 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 37.0 | 3.26e-01 | 71.3% | 97.2% |
| 3bz6A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 30.0 | 3.51e-01 | 88.7% | 79.5% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.89e-01 | 90.4% | 81.1% |
| 7jgsG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.87e-01 | 86.1% | 84.7% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 33.0 | 3.41e-01 | 85.2% | 69.5% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.50 | 36.0 | 3.61e-01 | 73.9% | 83.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2099738 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.81 | 76.0 | 5.17e-01 | 100.0% | 33.2% |
| 4941699 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 30.0 | 3.71e-01 | 77.4% | 69.3% |
| 3841170 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.61 | 47.0 | 4.71e-01 | 82.6% | 80.0% |
| 4023634 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 31.0 | 2.93e-01 | 96.5% | 37.9% |
| 3861204 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.60 | 46.0 | 4.71e-01 | 81.7% | 83.6% |
| 1036939 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.60 | 39.0 | 4.36e-01 | 96.5% | 83.5% |
| 3168448 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.57 | 38.0 | 3.74e-01 | 75.7% | 60.5% |
| 4305577 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.56 | 42.0 | 4.45e-01 | 90.4% | 93.0% |
| 4430885 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 42.0 | 4.22e-01 | 89.6% | 83.5% |
| 3501333 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.54 | 39.0 | 3.91e-01 | 78.3% | 74.8% |
| 3218026 | 3762.1.1.1 ↗ | alpha arrays › Poly(ADP-ribose) glycohydrolase helical domain › Poly(ADP-ribose) glycohydrolase helical domain › Poly(ADP-ribose) glycohydrolase helical domain › PARG_cat_N | 0.54 | 44.0 | 4.05e-01 | 89.6% | 89.3% |
| 3926383 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.53 | 36.0 | 3.35e-01 | 100.0% | 54.7% |
| 3471380 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.53 | 41.0 | 3.59e-01 | 83.5% | 72.8% |
| 3394297 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.52 | 36.0 | 3.46e-01 | 95.7% | 60.7% |
| 4115268 | 4137.1.1.1 ↗ | a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 | 0.52 | 31.0 | 3.70e-01 | 73.0% | 95.7% |
D2
medium
residues 1-25_228-378
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09344.16 best | Cas_CT1975 | 109.9 | 2.80e-31 | 77.8% | 34.2% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 29.0 | 3.53e-01 | 84.7% | 63.4% |
| 1vwxr00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.63 | 28.0 | 3.27e-01 | 99.4% | 56.8% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.62 | 21.0 | 3.39e-01 | 72.2% | 78.8% |
| 2dpkA01 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.57 | 28.0 | 3.32e-01 | 85.2% | 65.8% |
| 1qvrC04 | 6.10.140.130 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 22.0 | 2.68e-01 | 100.0% | 51.3% |
| 3fq4B01 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.56 | 26.0 | 3.18e-01 | 85.2% | 64.7% |
| 3e9tB00 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.55 | 27.0 | 3.22e-01 | 85.8% | 66.4% |
| 4py5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 42.0 | 4.08e-01 | 89.2% | 71.3% |
| 3ufiA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 30.0 | 3.44e-01 | 90.9% | 76.8% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 21.0 | 3.21e-01 | 71.0% | 94.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2099738 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.95 | 84.0 | 6.33e-01 | 90.9% | 100.0% |
| 3976202 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.91 | 79.0 | 6.00e-01 | 88.6% | 100.0% |
| 1346750 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.90 | 81.0 | 6.13e-01 | 92.0% | 99.7% |
| 3285052 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.83 | 72.0 | 5.76e-01 | 88.1% | 60.3% |
| 5013689 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.81 | 72.0 | 5.69e-01 | 93.2% | 100.0% |
| 5077837 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.81 | 71.0 | 5.97e-01 | 91.5% | 99.6% |
| 5031257 | 304.139.1.0 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related | 0.80 | 73.0 | 6.00e-01 | 95.5% | 99.3% |
| 3730451 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 21.0 | 3.19e-01 | 96.6% | 60.0% |
| 4933932 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.70 | 61.0 | 4.96e-01 | 92.0% | 99.7% |
| 417551 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.68 | 58.0 | 4.86e-01 | 90.3% | 100.0% |
| 3909339 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.62 | 27.0 | 3.50e-01 | 85.2% | 70.0% |
| 3475789 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.57 | 28.0 | 3.43e-01 | 85.8% | 70.4% |
| 3475388 | 11.1.1.804 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ANOS1 | 0.57 | 30.0 | 3.51e-01 | 84.7% | 71.2% |
| 3489149 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 31.0 | 4.15e-01 | 85.2% | 100.0% |
| 3487137 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 29.0 | 3.38e-01 | 84.7% | 67.7% |
| 3236983 | 11.1.1.804 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ANOS1 | 0.54 | 23.0 | 2.80e-01 | 84.7% | 57.4% |
| 3999001 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.52 | 25.0 | 3.12e-01 | 80.7% | 73.3% |
D3
medium
residues 26-57_183-227
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09344.16 best | Cas_CT1975 | 57.5 | 2.40e-15 | 67.5% | 13.6% |
| PF09344.16 | Cas_CT1975 | 40.2 | 4.30e-10 | 41.6% | 7.8% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e05B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 40.0 | 3.03e-01 | 79.2% | 77.6% |
| 4e2xA01 | 6.20.50.110 | Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain | 0.50 | 30.0 | 3.35e-01 | 94.8% | 83.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976202 | 304.139.1.4 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 | 0.94 | 90.0 | 5.57e-01 | 100.0% | 57.7% |
| 2705952 | 304.139.1.3 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 | 0.79 | 74.0 | 4.84e-01 | 100.0% | 53.1% |
| 4929402 | 304.139.1.3 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 | 0.70 | 63.0 | 4.14e-01 | 100.0% | 47.7% |
| 5075938 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.63 | 58.0 | 4.17e-01 | 100.0% | 63.9% |
| 4886912 | 3747.1.1.5 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod, LlgE_F_G_D1 | 0.55 | 37.0 | 2.99e-01 | 100.0% | 35.1% |
| 3493392 | 70.3.1.13 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET_TTL | 0.54 | 36.0 | 2.55e-01 | 92.2% | 22.1% |
| 3181439 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 37.0 | 3.44e-01 | 98.7% | 53.7% |
| 3942256 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.53 | 40.0 | 2.46e-01 | 83.1% | 40.6% |
| 3731361 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 45.0 | 3.35e-01 | 100.0% | 92.0% |
| 3547240 | 3473.1.1.0 ↗ | extended segments › Twin-arginine transport (Tat) system component TatA › Twin-arginine transport (Tat) system component TatA › Twin-arginine transport (Tat) system component TatA | 0.53 | 29.0 | 2.86e-01 | 88.3% | 46.6% |
| 4230774 | 101.1.9.117 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc | 0.52 | 32.0 | 2.98e-01 | 93.5% | 48.4% |
| 4145438 | 3747.1.1.3 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C | 0.52 | 32.0 | 2.97e-01 | 98.7% | 46.0% |
| 1488213 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.52 | 44.0 | 3.29e-01 | 100.0% | 41.1% |
| 3190573 | 706.2.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.51 | 33.0 | 3.70e-01 | 93.5% | 90.9% |
| 3684690 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.51 | 36.0 | 3.50e-01 | 100.0% | 64.4% |
| 5045394 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.51 | 39.0 | 3.13e-01 | 84.4% | 48.8% |