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SRR1747052_scaffold_19_prodigal-single.1__X__X__00055

Bact-Vir

SRR1747052_scaffold_19_prodigal-single.1__X__X__00055

Identity

Kingdom:
phage

Quality

77.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-91_185-196
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5wt3A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 39.0 3.21e-01 99.0% 30.9%
4evuB00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.67 37.0 4.27e-01 100.0% 77.9%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.62 37.0 3.38e-01 100.0% 42.1%
3i3wA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.59 33.0 3.65e-01 100.0% 68.8%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.59 39.0 4.29e-01 99.0% 85.0%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.59 48.0 3.40e-01 90.1% 50.0%
3d3bJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 34.0 3.67e-01 100.0% 66.7%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 34.0 3.67e-01 100.0% 67.1%
1ej6A03 3.40.50.10760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Reovirus core 0.58 48.0 3.63e-01 93.1% 84.8%
5by7A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 50.0 4.43e-01 96.0% 100.0%
7n7zA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 49.0 4.54e-01 99.0% 98.5%
4xs9A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 50.0 4.27e-01 96.0% 100.0%
7eqiA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 48.0 4.24e-01 95.0% 100.0%
2e1vA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.56 50.0 4.00e-01 100.0% 90.3%
3u3lC00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.56 46.0 3.60e-01 91.1% 82.6%
3s3lA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 48.0 4.17e-01 96.0% 100.0%
7vyuA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 48.0 4.13e-01 95.0% 100.0%
5t3dA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 49.0 4.13e-01 100.0% 65.1%
3fk5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 47.0 4.23e-01 98.0% 99.3%
1dcjA00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.52 39.0 4.25e-01 87.1% 98.8%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 37.0 2.90e-01 78.2% 94.5%
2p35A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.52e-01 90.1% 93.7%
2w1kA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.51 41.0 3.35e-01 100.0% 44.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.80 45.0 3.07e-01 100.0% 17.2%
4338458 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.79 45.0 3.03e-01 100.0% 16.4%
4623123 2003.1.5.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.72 40.0 2.87e-01 98.0% 20.4%
4964284 256.1.1.1 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.68 40.0 4.73e-01 100.0% 89.2%
4985331 256.1.1.1 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.66 40.0 4.50e-01 100.0% 80.0%
3492449 256.1.1.9 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › YbjQ_3 0.66 40.0 4.48e-01 100.0% 80.0%
5035880 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.66 39.0 4.80e-01 100.0% 98.3%
5000462 256.1.1.1 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.65 40.0 4.40e-01 100.0% 77.5%
3181314 513.2.1.0 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Putative transferase PH0793 N-terminal domain › Putative transferase PH0793 N-terminal domain 0.64 49.0 3.26e-01 100.0% 21.9%
3956183 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.63 56.0 4.54e-01 100.0% 61.0%
3789491 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.60 34.0 3.67e-01 100.0% 64.7%
4320402 323.1.1.7 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.58 51.0 3.92e-01 100.0% 88.9%
1844059 7581.1.1.12 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III_C 0.58 51.0 4.48e-01 97.0% 100.0%
4493215 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.57 41.0 3.21e-01 75.2% 93.0%
4991169 7581.1.1.15 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_C_1 0.57 50.0 3.41e-01 97.0% 39.7%
3283988 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.57 51.0 4.29e-01 100.0% 75.9%
4113985 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.56 34.0 3.70e-01 100.0% 71.8%
4483556 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.55 40.0 3.04e-01 76.2% 42.9%
4349527 323.1.1.7 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.54 47.0 3.47e-01 100.0% 73.7%
4043386 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.53 49.0 3.14e-01 100.0% 24.8%
4952268 323.1.1.2 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CAT 0.53 47.0 3.81e-01 100.0% 85.7%
2603270 7581.1.1.12 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III_C 0.53 47.0 3.97e-01 99.0% 98.3%
5065197 1137.2.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › GckA/TtuD-like domain 2 › GckA/TtuD-like domain 2 › MOFRL 0.53 46.0 3.82e-01 96.0% 99.4%
3937283 7552.1.1.1 ↗ a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.52 43.0 2.84e-01 94.1% 56.0%
3977288 872.4.1.1 ↗ a+b two layers › Dodecin subunit-like › YdgH-like › YdgH-like › YdgH_BhsA-like 0.52 36.0 3.85e-01 97.0% 84.7%
3470427 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.50 42.0 2.95e-01 91.1% 78.1%
D2 high residues 100-163
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 45.0 4.24e-01 76.6% 97.6%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 40.0 3.82e-01 70.3% 53.2%
1xf1A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.61 43.0 3.36e-01 73.4% 85.1%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.61 42.0 4.08e-01 71.9% 90.1%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 3.95e-01 79.7% 96.9%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.55e-01 79.7% 50.0%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 3.64e-01 76.6% 99.0%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.56e-01 84.4% 67.7%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 38.0 3.43e-01 70.3% 46.3%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 38.0 3.69e-01 73.4% 88.5%
3qvoA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 38.0 2.77e-01 71.9% 72.4%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.27e-01 70.3% 49.0%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.55 37.0 3.50e-01 70.3% 100.0%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 3.66e-01 100.0% 74.6%
1zr6A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 38.0 3.02e-01 75.0% 61.7%
1uhvA01 2.60.40.1500 Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 0.54 38.0 2.96e-01 75.0% 53.2%
1es7B00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 37.0 3.45e-01 71.9% 85.5%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 38.0 2.95e-01 76.6% 44.6%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.47e-01 78.1% 95.8%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.22e-01 73.4% 99.1%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.53 37.0 3.10e-01 78.1% 81.8%
6a6yA00 2.60.40.1490 Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like 0.52 42.0 3.36e-01 96.9% 96.7%
2d7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.36e-01 70.3% 59.7%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.52 41.0 3.34e-01 98.4% 88.5%
5h4eA01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.51 37.0 2.64e-01 82.8% 45.5%
2wllA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.50 37.0 2.92e-01 81.2% 52.4%
2m88A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 33.0 3.14e-01 70.3% 93.0%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3701967 304.24.1.28 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PF30953 0.66 51.0 4.31e-01 85.9% 92.7%
4961379 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.65 45.0 3.10e-01 71.9% 45.9%
146929 3115.3.1.1 ↗ a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.65 43.0 4.55e-01 70.3% 91.1%
5062189 304.24.1.5 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.61 44.0 4.27e-01 79.7% 100.0%
3911204 382.1.1.16 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.60 44.0 4.25e-01 79.7% 97.3%
3471440 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.60 41.0 3.84e-01 73.4% 95.3%
3535768 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 43.0 3.71e-01 81.2% 49.0%
3210164 304.44.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.58 39.0 3.04e-01 70.3% 55.5%
3988217 241.12.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.58 47.0 3.42e-01 93.8% 86.5%
3226828 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 39.0 3.23e-01 70.3% 36.0%
3366088 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.58 43.0 2.87e-01 82.8% 67.8%
4458441 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.57 41.0 3.16e-01 75.0% 31.6%
3897315 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.57 39.0 3.68e-01 71.9% 92.5%
4929401 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 41.0 3.92e-01 79.7% 95.0%
3554291 382.1.1.16 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.57 39.0 3.66e-01 73.4% 83.1%
3241250 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 39.0 3.33e-01 71.9% 54.3%
3273362 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 3.89e-01 81.2% 61.2%
4327532 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.56 39.0 3.30e-01 76.6% 45.0%
4398420 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.55 37.0 3.11e-01 70.3% 85.0%
4338821 221.1.1.69 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM 0.55 41.0 3.54e-01 81.2% 49.5%
3265243 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.32e-01 73.4% 58.0%
5001166 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.54 44.0 3.62e-01 96.9% 52.6%
3863856 382.1.1.16 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.53 39.0 3.67e-01 79.7% 90.0%
3421596 10.12.1.31 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_5 0.53 39.0 3.25e-01 79.7% 49.2%
3746678 382.1.1.16 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.52 38.0 3.71e-01 81.2% 94.7%
5040431 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.45e-01 76.6% 61.2%
3574601 11.1.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.52 38.0 3.04e-01 82.8% 52.7%
3996535 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 35.0 3.26e-01 71.9% 85.6%
3939699 4342.1.1.1 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region 0.52 36.0 2.55e-01 75.0% 27.3%
4024040 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.51 36.0 3.66e-01 78.1% 78.5%
3494105 221.1.1.64 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.50 36.0 3.51e-01 82.8% 66.3%