←Back to structures

SRR1747052_scaffold_19_prodigal-single.1__X__X__00097

Bact-Vir

SRR1747052_scaffold_19_prodigal-single.1__X__X__00097

Identity

Kingdom:
phage

Quality

63.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 222-370
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kx7A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.61 55.0 4.60e-01 96.6% 75.5%
4wz9A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.61 54.0 4.56e-01 96.6% 74.8%
3ce2A03 1.10.1370.20 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › Oligoendopeptidase f, C-terminal domain 0.59 54.0 4.01e-01 99.3% 65.6%
2ztgA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 45.0 3.83e-01 94.6% 62.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077870 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.67 59.0 5.11e-01 94.0% 94.5%
4285687 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.61 46.0 4.77e-01 77.2% 91.9%
5045375 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.61 55.0 4.69e-01 96.6% 73.6%
5058083 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.53 39.0 3.20e-01 76.5% 93.8%
D2 medium residues 1-206
PDB