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SRR1747052_scaffold_19_prodigal-single.1__X__X__00163
Bact-VirSRR1747052_scaffold_19_prodigal-single.1__X__X__00163
Identity
- Kingdom:
- phage
Quality
43.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-56
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 51.0 | 3.82e-01 | 84.6% | 43.8% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.65 | 44.0 | 2.99e-01 | 98.1% | 19.4% |
| 2qg3A00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.61 | 50.0 | 3.40e-01 | 92.3% | 62.4% |
| 5t8uB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 42.0 | 2.77e-01 | 86.5% | 94.8% |
| 2nutB04 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.55 | 41.0 | 2.75e-01 | 86.5% | 52.5% |
| 2v6bC02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.55 | 45.0 | 3.28e-01 | 92.3% | 81.2% |
| 8b0qA01 | 3.30.420.340 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain | 0.53 | 46.0 | 3.21e-01 | 100.0% | 93.2% |
| 2n0sA01 | 3.40.50.1780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 39.0 | 2.85e-01 | 86.5% | 41.4% |
| 4iumA00 | 3.90.70.160 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.52 | 38.0 | 2.91e-01 | 98.1% | 32.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3894313 | 11.1.5.116 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF26282 | 0.70 | 41.0 | 3.12e-01 | 86.5% | 25.8% |
| 5057952 | 375.1.1.325 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC | 0.64 | 53.0 | 5.04e-01 | 100.0% | 80.0% |
| 3730835 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.63 | 54.0 | 4.53e-01 | 100.0% | 78.9% |
| 4426216 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.62 | 51.0 | 4.41e-01 | 98.1% | 92.2% |
| 5032144 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.59 | 43.0 | 3.03e-01 | 84.6% | 35.0% |
| 3609555 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 44.0 | 4.49e-01 | 90.4% | 96.0% |
| 5016169 | 3769.1.1.0 ↗ | 0.58 | 45.0 | 4.57e-01 | 92.3% | 98.0% | |
| 3562933 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.57 | 47.0 | 3.39e-01 | 92.3% | 71.6% |
| 3516802 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.57 | 39.0 | 4.33e-01 | 88.5% | 95.0% |
| 4947463 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.57 | 48.0 | 3.90e-01 | 96.2% | 81.9% |
| 4460376 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.57 | 43.0 | 3.42e-01 | 86.5% | 65.0% |
| 3732187 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 46.0 | 3.10e-01 | 92.3% | 70.5% |
| 5012013 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.56 | 41.0 | 3.02e-01 | 78.8% | 99.3% |
| 3502144 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.55 | 38.0 | 4.19e-01 | 88.5% | 95.0% |
| 5056653 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.54 | 40.0 | 4.26e-01 | 82.7% | 97.7% |
| 3600628 | 904.2.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › UBR box › UBR box | 0.54 | 40.0 | 3.75e-01 | 80.8% | 67.7% |
| 4933170 | 2004.1.1.211 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P | 0.54 | 47.0 | 3.20e-01 | 100.0% | 87.5% |
| 3610069 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.53 | 44.0 | 2.90e-01 | 90.4% | 35.8% |
| 3598026 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 45.0 | 3.29e-01 | 98.1% | 73.1% |
| 4931152 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 34.0 | 3.76e-01 | 71.2% | 94.3% |
| 3113012 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.52 | 39.0 | 2.78e-01 | 84.6% | 29.8% |
| 5025566 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.51 | 41.0 | 4.11e-01 | 96.2% | 85.5% |
| 5027281 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 34.0 | 3.36e-01 | 73.1% | 96.6% |
D2
high
residues 81-210
D3
high
residues 230-312