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SRR1747052_scaffold_27_prodigal-single.1__X__X__00021
Bact-VirSRR1747052_scaffold_27_prodigal-single.1__X__X__00021
Identity
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-206
Domain cluster:
rep: SRR1747065_scaffold_9_prodigal-single.1__X__X__00063__D170-389
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09992.15 best | NAGPA | 77.7 | 1.80e-21 | 78.0% | 97.6% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o6qA02 | 3.30.70.2720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 29.0 | 3.71e-01 | 81.5% | 83.3% |
| 2nykA02 | 2.60.40.2530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 21.0 | 3.20e-01 | 92.7% | 79.3% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.53 | 28.0 | 3.72e-01 | 81.5% | 93.9% |
| 3mwbB03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 21.0 | 2.89e-01 | 94.1% | 73.7% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 20.0 | 2.83e-01 | 85.9% | 71.6% |
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 18.0 | 2.80e-01 | 84.9% | 77.5% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 25.0 | 3.57e-01 | 70.7% | 100.0% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 21.0 | 2.94e-01 | 93.7% | 79.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3958897 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.73 | 43.0 | 5.68e-01 | 79.0% | 100.0% |
| 3999603 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.69 | 20.0 | 2.92e-01 | 93.7% | 52.0% |
| 5081333 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.63 | 21.0 | 3.38e-01 | 85.4% | 77.3% |
| 4032691 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.61 | 20.0 | 2.95e-01 | 98.0% | 62.1% |
| 4604111 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 20.0 | 3.03e-01 | 91.2% | 68.8% |
| 4552838 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.58 | 20.0 | 2.87e-01 | 98.0% | 63.4% |
| 5080331 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 22.0 | 3.11e-01 | 93.7% | 76.2% |
| 3219528 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.53 | 29.0 | 3.65e-01 | 81.5% | 88.3% |
| 4952685 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.50 | 18.0 | 2.78e-01 | 84.9% | 77.5% |
| 3408914 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.50 | 28.0 | 3.49e-01 | 81.5% | 86.2% |
| 4928369 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.50 | 26.0 | 3.18e-01 | 82.4% | 75.4% |
D2
high
residues 485-552
Domain cluster:
rep: AY257527.1__AAP83501.1__X__00032__D28-102
CATH (84)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x60A01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.91 | 82.0 | 8.03e-01 | 100.0% | 91.7% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.74 | 56.0 | 4.03e-01 | 89.7% | 28.8% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.73 | 61.0 | 5.41e-01 | 91.2% | 64.2% |
| 2mkyA00 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.69 | 51.0 | 5.43e-01 | 94.1% | 94.8% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.68 | 53.0 | 5.27e-01 | 94.1% | 81.7% |
| 1utaA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.68 | 59.0 | 5.75e-01 | 100.0% | 88.3% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.68 | 61.0 | 5.28e-01 | 100.0% | 66.0% |
| 4aukA01 | 3.30.70.2810 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 58.0 | 5.59e-01 | 100.0% | 91.1% |
| 1qupA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 54.0 | 5.38e-01 | 100.0% | 88.6% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 57.0 | 5.74e-01 | 100.0% | 97.1% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.65 | 52.0 | 4.76e-01 | 95.6% | 64.9% |
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 58.0 | 5.53e-01 | 100.0% | 95.0% |
| 1rzmA01 | 3.30.70.1140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 | 0.65 | 54.0 | 5.17e-01 | 97.1% | 80.0% |
| 1nf2A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.65 | 52.0 | 4.50e-01 | 88.2% | 89.6% |
| 1vx7G00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.64 | 57.0 | 4.69e-01 | 100.0% | 63.7% |
| 7xinA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 53.0 | 4.66e-01 | 95.6% | 64.2% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 52.0 | 4.69e-01 | 95.6% | 64.3% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.64 | 56.0 | 5.32e-01 | 100.0% | 86.6% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.63 | 53.0 | 4.94e-01 | 94.1% | 75.9% |
| 1qm9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 54.0 | 4.88e-01 | 100.0% | 73.5% |
| 5i2cB01 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.63 | 52.0 | 4.17e-01 | 98.5% | 44.5% |
| 4pwuC00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 55.0 | 5.30e-01 | 100.0% | 89.7% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 55.0 | 5.20e-01 | 100.0% | 87.8% |
| 2qmaA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 53.0 | 4.40e-01 | 97.1% | 71.2% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 53.0 | 5.25e-01 | 98.5% | 94.6% |
| 4ch7A02 | 3.30.70.3460 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 54.0 | 3.99e-01 | 100.0% | 65.1% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.62 | 52.0 | 4.72e-01 | 97.1% | 68.8% |
| 4v1al00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.62 | 45.0 | 3.68e-01 | 95.6% | 40.6% |
| 2ia0B02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.61 | 54.0 | 4.82e-01 | 100.0% | 70.7% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.61 | 52.0 | 4.43e-01 | 100.0% | 65.6% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 52.0 | 5.15e-01 | 97.1% | 100.0% |
| 3pgvA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.61 | 49.0 | 4.30e-01 | 88.2% | 89.1% |
| 1usmA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.61 | 51.0 | 4.93e-01 | 97.1% | 85.7% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.61 | 53.0 | 4.02e-01 | 100.0% | 46.7% |
| 4qbuA03 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.60 | 51.0 | 5.18e-01 | 100.0% | 98.5% |
| 2re1A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 52.0 | 5.11e-01 | 100.0% | 94.6% |
| 3onqA02 | 3.30.70.2730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 53.0 | 5.03e-01 | 100.0% | 91.4% |
| 2crlA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 50.0 | 5.08e-01 | 100.0% | 95.7% |
| 4erdA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 51.0 | 4.48e-01 | 100.0% | 71.3% |
| 1dcoA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.60 | 51.0 | 4.53e-01 | 95.6% | 67.7% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 51.0 | 4.63e-01 | 100.0% | 80.8% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 51.0 | 4.85e-01 | 100.0% | 90.6% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 51.0 | 4.86e-01 | 98.5% | 86.4% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.60 | 52.0 | 5.04e-01 | 100.0% | 89.6% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 4.77e-01 | 100.0% | 78.8% |
| 2jsxA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.59 | 52.0 | 5.16e-01 | 100.0% | 95.8% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.59 | 51.0 | 4.73e-01 | 100.0% | 83.0% |
| 1jwwA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 4.93e-01 | 100.0% | 87.5% |
| 1mwyA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 5.05e-01 | 100.0% | 93.2% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 51.0 | 4.58e-01 | 100.0% | 70.7% |
| 2cpdA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 49.0 | 4.86e-01 | 100.0% | 94.7% |
| 4dw8A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.59 | 46.0 | 4.06e-01 | 88.2% | 89.6% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 50.0 | 4.82e-01 | 100.0% | 92.4% |
| 1vi7A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 48.0 | 4.83e-01 | 100.0% | 91.5% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 4.80e-01 | 100.0% | 97.0% |
| 2zbcA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 51.0 | 5.01e-01 | 100.0% | 94.5% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.58 | 50.0 | 5.07e-01 | 100.0% | 100.0% |
| 1ewqB01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.58 | 46.0 | 3.90e-01 | 88.2% | 80.5% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 49.0 | 4.53e-01 | 100.0% | 77.4% |
| 2dy1A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.58 | 51.0 | 4.95e-01 | 100.0% | 89.5% |
| 1cc8A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 50.0 | 4.92e-01 | 100.0% | 94.4% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 49.0 | 4.30e-01 | 100.0% | 75.2% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 48.0 | 4.61e-01 | 100.0% | 92.9% |
| 2djwA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.57 | 48.0 | 4.74e-01 | 100.0% | 94.6% |
| 1jqgA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.57 | 46.0 | 4.27e-01 | 100.0% | 68.1% |
| 2kkhA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.75e-01 | 100.0% | 92.0% |
| 3mtjA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 49.0 | 4.77e-01 | 100.0% | 93.4% |
| 2plgA01 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 45.0 | 3.81e-01 | 95.6% | 63.6% |
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 47.0 | 4.74e-01 | 100.0% | 98.6% |
| 2ctfA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 44.0 | 3.95e-01 | 97.1% | 59.8% |
| 1n4nA00 | 3.30.30.10 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like | 0.56 | 37.0 | 4.10e-01 | 75.0% | 97.9% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 49.0 | 4.31e-01 | 100.0% | 73.8% |
| 1hi8A03 | 3.30.70.1600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 47.0 | 3.61e-01 | 100.0% | 63.1% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.50e-01 | 83.8% | 95.3% |
| 2j0wA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 46.0 | 4.57e-01 | 100.0% | 98.7% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.55 | 43.0 | 4.37e-01 | 95.6% | 88.2% |
| 3vtiA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 46.0 | 4.22e-01 | 100.0% | 76.0% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 47.0 | 4.33e-01 | 100.0% | 79.6% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 48.0 | 4.41e-01 | 100.0% | 83.1% |
| 1p4xA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.44e-01 | 83.8% | 81.3% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.54 | 45.0 | 4.14e-01 | 100.0% | 72.4% |
| 2p5vA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.54 | 45.0 | 4.30e-01 | 100.0% | 84.5% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 46.0 | 4.40e-01 | 100.0% | 90.0% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.53 | 43.0 | 4.02e-01 | 100.0% | 71.6% |
ECOD (94)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 157953 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.91 | 82.0 | 7.74e-01 | 100.0% | 83.5% |
| 3164039 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.90 | 80.0 | 7.82e-01 | 100.0% | 87.8% |
| 3976762 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.90 | 84.0 | 8.12e-01 | 100.0% | 90.7% |
| 3971048 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.86 | 78.0 | 7.76e-01 | 100.0% | 95.7% |
| 3972855 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.85 | 77.0 | 7.45e-01 | 100.0% | 89.3% |
| 4603561 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.85 | 78.0 | 7.35e-01 | 100.0% | 85.0% |
| 4076311 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.85 | 76.0 | 5.76e-01 | 100.0% | 43.2% |
| 3838105 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.81 | 70.0 | 7.00e-01 | 100.0% | 92.9% |
| 3838053 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.80 | 68.0 | 6.96e-01 | 100.0% | 96.9% |
| 4048407 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.80 | 72.0 | 6.85e-01 | 100.0% | 86.3% |
| 157557 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.75 | 56.0 | 5.84e-01 | 95.6% | 88.7% |
| 4159102 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.75 | 66.0 | 6.58e-01 | 100.0% | 94.3% |
| 4217761 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.75 | 67.0 | 6.41e-01 | 100.0% | 86.1% |
| 4122798 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.74 | 57.0 | 4.98e-01 | 95.6% | 54.3% |
| 4483441 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.74 | 67.0 | 6.48e-01 | 100.0% | 90.7% |
| 4038796 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.73 | 55.0 | 5.35e-01 | 95.6% | 73.3% |
| 1481304 | 304.5.1.4 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CdAMP_rec | 0.70 | 52.0 | 5.45e-01 | 97.1% | 93.1% |
| 4118694 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.70 | 62.0 | 6.08e-01 | 100.0% | 90.7% |
| 4993815 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.70 | 56.0 | 5.18e-01 | 98.5% | 69.4% |
| 3388102 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.70 | 52.0 | 5.32e-01 | 95.6% | 84.6% |
| 3941725 | 304.28.1.3 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 | 0.69 | 62.0 | 5.74e-01 | 100.0% | 83.5% |
| 5023882 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.68 | 60.0 | 5.99e-01 | 100.0% | 97.1% |
| 3165390 | 304.24.1.36 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SPOR | 0.68 | 59.0 | 5.66e-01 | 98.5% | 82.5% |
| 4997133 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.68 | 61.0 | 5.44e-01 | 100.0% | 78.9% |
| 3603234 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.68 | 61.0 | 5.21e-01 | 100.0% | 61.8% |
| 3734895 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.67 | 57.0 | 5.05e-01 | 100.0% | 79.0% |
| 3686938 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.67 | 58.0 | 5.43e-01 | 100.0% | 85.9% |
| 4523274 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.66 | 58.0 | 4.20e-01 | 100.0% | 36.9% |
| 4322692 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.65 | 56.0 | 5.40e-01 | 100.0% | 95.0% |
| 3381288 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.65 | 57.0 | 5.35e-01 | 100.0% | 83.5% |
| 3569153 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 56.0 | 5.36e-01 | 100.0% | 86.3% |
| 4948690 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 57.0 | 3.63e-01 | 100.0% | 27.9% |
| 5020167 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.64 | 54.0 | 5.34e-01 | 100.0% | 94.7% |
| 3972123 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.63 | 55.0 | 4.81e-01 | 100.0% | 66.7% |
| 5556 | 242.1.1.4 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Endonuc_subdom | 0.63 | 53.0 | 4.74e-01 | 94.1% | 67.3% |
| 5001157 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.63 | 54.0 | 5.04e-01 | 95.6% | 88.2% |
| 4297401 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.63 | 54.0 | 5.23e-01 | 100.0% | 95.0% |
| 4965406 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.63 | 54.0 | 5.22e-01 | 100.0% | 90.0% |
| 4999703 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.63 | 54.0 | 5.02e-01 | 100.0% | 86.7% |
| 4134039 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.63 | 54.0 | 5.26e-01 | 100.0% | 96.0% |
| 4676848 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.62 | 54.0 | 5.30e-01 | 100.0% | 89.3% |
| 3997731 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.62 | 55.0 | 5.27e-01 | 100.0% | 88.7% |
| 3387953 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.62 | 53.0 | 5.35e-01 | 98.5% | 98.6% |
| 4331101 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.62 | 53.0 | 4.98e-01 | 100.0% | 95.3% |
| 4953322 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.62 | 53.0 | 5.12e-01 | 100.0% | 90.0% |
| 5082025 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.62 | 53.0 | 5.20e-01 | 100.0% | 93.3% |
| 4976695 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.62 | 52.0 | 4.87e-01 | 100.0% | 74.4% |
| 3989870 | 304.24.1.2 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF1949 | 0.62 | 51.0 | 5.04e-01 | 100.0% | 86.7% |
| 4101334 | 304.28.1.3 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 | 0.62 | 55.0 | 5.01e-01 | 100.0% | 77.8% |
| 3528332 | 304.163.1.1 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 | 0.61 | 53.0 | 5.21e-01 | 100.0% | 98.7% |
| 3738385 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.61 | 53.0 | 5.02e-01 | 100.0% | 81.2% |
| 3598887 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 53.0 | 5.15e-01 | 100.0% | 96.0% |
| 4105204 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.61 | 53.0 | 5.06e-01 | 100.0% | 83.7% |
| 3737984 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.61 | 51.0 | 4.66e-01 | 100.0% | 83.0% |
| 4779977 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 51.0 | 4.86e-01 | 100.0% | 90.6% |
| 3597641 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.61 | 52.0 | 5.09e-01 | 100.0% | 96.0% |
| 5061644 | 304.11.1.15 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Peptidase_S8 | 0.60 | 50.0 | 4.62e-01 | 98.5% | 71.6% |
| 3390426 | 304.163.1.1 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 | 0.60 | 51.0 | 4.62e-01 | 100.0% | 74.0% |
| 3226297 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.60 | 52.0 | 4.98e-01 | 100.0% | 88.7% |
| 5081186 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.60 | 51.0 | 4.98e-01 | 100.0% | 93.3% |
| 3928208 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.60 | 52.0 | 5.06e-01 | 100.0% | 93.3% |
| 3218069 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.60 | 49.0 | 5.01e-01 | 95.6% | 96.9% |
| 4946891 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.60 | 51.0 | 5.06e-01 | 100.0% | 95.7% |
| 5035705 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.60 | 52.0 | 4.87e-01 | 100.0% | 81.2% |
| 3174092 | 305.2.1.1 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a | 0.60 | 51.0 | 4.39e-01 | 97.1% | 66.4% |
| 3698115 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.60 | 50.0 | 3.82e-01 | 97.1% | 92.4% |
| 4963354 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 52.0 | 4.66e-01 | 100.0% | 70.5% |
| 4455319 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.60 | 52.0 | 4.95e-01 | 100.0% | 86.3% |
| 3624653 | 304.163.1.1 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 | 0.60 | 51.0 | 4.99e-01 | 100.0% | 94.7% |
| 4340473 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.59 | 52.0 | 4.85e-01 | 100.0% | 80.0% |
| 144952 | 304.5.1.10 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CBD_PlyG | 0.59 | 51.0 | 4.77e-01 | 100.0% | 78.8% |
| 4939299 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.59 | 51.0 | 4.74e-01 | 100.0% | 75.6% |
| 4987876 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.59 | 51.0 | 4.82e-01 | 100.0% | 85.9% |
| 5080331 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.59 | 52.0 | 4.52e-01 | 100.0% | 77.1% |
| 3603204 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.59 | 46.0 | 4.75e-01 | 100.0% | 96.9% |
| 4965231 | 304.24.1.2 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF1949 | 0.59 | 47.0 | 4.75e-01 | 100.0% | 90.0% |
| 5068045 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 49.0 | 4.86e-01 | 100.0% | 93.3% |
| 4115819 | 304.48.1.48 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 | 0.59 | 49.0 | 3.80e-01 | 100.0% | 54.7% |
| 3424438 | 304.9.1.47 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 | 0.59 | 51.0 | 4.55e-01 | 100.0% | 73.0% |
| 5046686 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 50.0 | 4.78e-01 | 100.0% | 90.0% |
| 4940257 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 49.0 | 4.96e-01 | 100.0% | 98.6% |
| 5038088 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.58 | 49.0 | 4.98e-01 | 98.5% | 98.5% |
| 4107951 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.58 | 50.0 | 4.99e-01 | 98.5% | 100.0% |
| 3387138 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.58 | 50.0 | 4.87e-01 | 100.0% | 93.3% |
| 4970578 | 304.11.1.16 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › DUF2110_C | 0.58 | 50.0 | 4.64e-01 | 100.0% | 76.7% |
| 3615512 | 305.2.1.0 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) | 0.57 | 49.0 | 4.10e-01 | 98.5% | 71.7% |
| 3742418 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.57 | 49.0 | 4.58e-01 | 100.0% | 83.5% |
| 3740503 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 43.0 | 4.40e-01 | 97.1% | 93.8% |
| 3742864 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 47.0 | 4.12e-01 | 100.0% | 64.5% |
| 5031156 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 47.0 | 4.54e-01 | 100.0% | 88.7% |
| 5075438 | 304.4.1.29 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg_3 | 0.55 | 46.0 | 4.40e-01 | 100.0% | 81.2% |
| 5040129 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.55 | 47.0 | 4.28e-01 | 100.0% | 73.7% |
| 5058607 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 47.0 | 4.35e-01 | 100.0% | 80.0% |
| 3578641 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.52 | 42.0 | 4.24e-01 | 100.0% | 94.3% |
D3
medium
residues 239-389
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01510.31 best | Amidase_2 | 26.5 | 1.00e-05 | 66.9% | 59.7% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rdrA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.85 | 57.0 | 5.67e-01 | 91.4% | 66.7% |
| 3latA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.79 | 55.0 | 4.85e-01 | 94.7% | 51.2% |
| 4ivvA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.78 | 52.0 | 4.92e-01 | 96.7% | 58.0% |
| 4olsA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.76 | 53.0 | 4.90e-01 | 92.1% | 57.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4140249 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.84 | 57.0 | 5.55e-01 | 92.1% | 63.0% |
| 1904118 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.78 | 51.0 | 4.85e-01 | 96.0% | 57.6% |
| 3960855 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.50 | 20.0 | 3.20e-01 | 70.9% | 95.0% |
D4
medium
residues 390-463
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ybzA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.65 | 44.0 | 4.46e-01 | 83.8% | 69.7% |
| 1m3sB00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.61 | 55.0 | 4.09e-01 | 100.0% | 85.2% |
| 5d91A02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.57 | 48.0 | 3.65e-01 | 100.0% | 36.9% |
| 1u6zA03 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.57 | 46.0 | 3.68e-01 | 100.0% | 44.5% |
| 3ezxA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.55 | 45.0 | 4.37e-01 | 98.6% | 81.4% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.55 | 35.0 | 3.44e-01 | 81.1% | 60.5% |
| 1gs0A01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.54 | 46.0 | 3.96e-01 | 100.0% | 81.4% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.53 | 41.0 | 3.71e-01 | 97.3% | 58.7% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.53 | 35.0 | 3.46e-01 | 91.9% | 62.8% |
| 4hhyC01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.53 | 45.0 | 3.84e-01 | 100.0% | 80.9% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 41.0 | 3.35e-01 | 95.9% | 44.5% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 44.0 | 3.54e-01 | 95.9% | 50.7% |
| 4abxC01 | 6.10.140.1080 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 39.0 | 3.92e-01 | 82.4% | 87.0% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.52 | 43.0 | 3.30e-01 | 97.3% | 75.4% |
| 1eniA00 | 1.10.440.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease V › T4 endonuclease V | 0.51 | 43.0 | 3.59e-01 | 97.3% | 63.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3856885 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 42.0 | 3.04e-01 | 89.2% | 22.0% |
| 3660882 | 109.4.1.920 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro_2 | 0.58 | 50.0 | 3.31e-01 | 100.0% | 36.8% |
| 4024626 | 545.1.2.2 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain › ETRAMP | 0.56 | 47.0 | 3.80e-01 | 93.2% | 50.3% |
| 4264023 | 545.1.2.0 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain | 0.56 | 47.0 | 4.67e-01 | 94.6% | 87.5% |
| 3753345 | 609.1.1.0 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase | 0.55 | 46.0 | 3.96e-01 | 94.6% | 73.3% |
| 3894192 | 101.1.1.345 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_KIF26A_B_1st | 0.54 | 45.0 | 4.46e-01 | 94.6% | 93.8% |
| 3628125 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.54 | 33.0 | 3.35e-01 | 77.0% | 60.0% |
| 5047150 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.53 | 40.0 | 2.97e-01 | 81.1% | 31.5% |
| 3170867 | 3730.1.1.2 ↗ | alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › FMP23 | 0.52 | 44.0 | 3.93e-01 | 95.9% | 84.5% |
| 3347723 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.51 | 42.0 | 3.59e-01 | 97.3% | 75.6% |
| 3590855 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.50 | 38.0 | 2.30e-01 | 79.7% | 12.0% |
| 2541650 | 3620.1.1.1 ↗ | alpha bundles › Factor H-binding protein BbCRASP-1 › Factor H-binding protein BbCRASP-1 › Factor H-binding protein BbCRASP-1 › PFam54_60 | 0.50 | 36.0 | 2.72e-01 | 79.7% | 27.4% |
| 3715029 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 41.0 | 2.77e-01 | 95.9% | 29.7% |