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SRR1747052_scaffold_27_prodigal-single.1__X__X__00131

Bact-Vir

SRR1747052_scaffold_27_prodigal-single.1__X__X__00131

Identity

Kingdom:
phage

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-83
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26345.1 best ScoMcrA_N 27.9 2.90e-06 100.0% 66.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.10e-01 100.0% 84.9%
2kt2A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.93e-01 75.0% 95.7%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.52 35.0 3.91e-01 72.4% 100.0%
2jv9A01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.52 39.0 3.59e-01 85.5% 76.9%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.52 36.0 3.44e-01 77.6% 62.9%
1uyvA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 37.0 2.61e-01 77.6% 66.0%
4l00A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 41.0 3.23e-01 94.7% 84.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1687145 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 45.0 4.22e-01 100.0% 69.4%
5058906 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.95e-01 100.0% 73.8%
3404553 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 3.75e-01 100.0% 80.0%
4663141 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 37.0 3.28e-01 93.4% 50.0%
3474022 193.1.1.1 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.51 40.0 3.35e-01 86.8% 57.6%
3964745 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 35.0 3.50e-01 72.4% 95.0%
D2 high residues 88-266
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1utaA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.54 24.0 3.35e-01 70.9% 89.6%
1rwuA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 26.0 3.50e-01 73.7% 93.1%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 27.0 3.41e-01 81.0% 86.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953647 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.51 27.0 3.56e-01 84.9% 93.7%
D3 high residues 275-378_508-590
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07728.21 best AAA_5 51.4 1.60e-13 92.0% 100.0%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.77 63.0 4.83e-01 100.0% 40.6%
3vkgA05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 57.0 6.37e-01 100.0% 96.6%
3vkhB09 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 61.0 6.20e-01 100.0% 86.9%
3m6aA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 51.0 5.67e-01 100.0% 87.3%
3vkhA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 61.0 4.80e-01 100.0% 45.3%
3eccA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 52.0 5.57e-01 100.0% 93.8%
4bj1A02 3.40.50.12060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 47.0 5.26e-01 100.0% 92.6%
1g8pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 58.0 5.66e-01 100.0% 92.0%
5o6bB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 52.0 5.44e-01 100.0% 97.7%
2vl7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 4.85e-01 100.0% 93.6%
2cvhA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 49.0 4.74e-01 100.0% 80.8%
2p6rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 4.61e-01 100.0% 85.1%
2ekdA00 3.40.50.11570 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF257 0.55 49.0 4.83e-01 100.0% 88.1%
6bs3B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 47.0 3.99e-01 100.0% 92.7%
3mwyW03 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.51 48.0 4.21e-01 100.0% 74.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4007069 2004.1.1.624 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_5 0.93 83.0 8.02e-01 100.0% 83.4%
3290062 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.93 85.0 7.07e-01 100.0% 60.1%
4974760 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.91 80.0 7.85e-01 100.0% 86.2%
3385549 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.89 85.0 8.43e-01 98.4% 97.4%
4958444 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.88 86.0 8.38e-01 100.0% 95.5%
4958529 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.88 73.0 7.38e-01 100.0% 85.9%
5015090 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.85 83.0 6.74e-01 100.0% 95.6%
5014143 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.84 82.0 7.77e-01 100.0% 94.8%
5059517 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.83 74.0 6.96e-01 100.0% 78.6%
4308308 2004.1.1.771 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_lid_NAV1 0.81 67.0 5.33e-01 100.0% 46.4%
3291643 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.80 66.0 6.06e-01 100.0% 68.7%
4318504 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.80 64.0 6.76e-01 100.0% 91.2%
3922834 2004.1.1.180 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_6 0.79 60.0 5.90e-01 100.0% 73.0%
4890928 2004.1.1.93 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynein_heavy 0.79 60.0 4.93e-01 100.0% 47.1%
4991401 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.78 75.0 6.21e-01 100.0% 62.3%
4928781 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.78 74.0 5.75e-01 100.0% 51.1%
3702069 2004.1.1.181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.77 63.0 5.96e-01 100.0% 73.2%
3801049 148.1.3.208 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_NAV1 0.77 54.0 4.59e-01 100.0% 46.7%
3892463 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 56.0 4.83e-01 100.0% 51.1%
3716216 2004.1.1.181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.76 62.0 5.76e-01 100.0% 68.7%
3759530 148.1.3.208 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_NAV1 0.76 55.0 4.76e-01 100.0% 50.2%
3708220 2004.1.1.181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.75 63.0 6.18e-01 100.0% 81.0%
3712546 2004.1.1.181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.73 63.0 6.48e-01 100.0% 93.9%
4888756 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.73 57.0 5.71e-01 100.0% 79.1%
5016962 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.67 58.0 5.19e-01 100.0% 68.0%
5023501 2004.1.1.58 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.62 57.0 5.07e-01 100.0% 71.2%
3496498 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 57.0 5.38e-01 100.0% 84.7%
5079726 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 49.0 4.49e-01 100.0% 79.6%
3450430 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 32.0 3.28e-01 86.1% 65.7%
D4 high residues 603-680
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF28529.1 best McrB_lid 46.0 6.00e-12 79.5% 90.2%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mqmA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.67 58.0 5.07e-01 100.0% 87.3%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.65 37.0 3.61e-01 100.0% 50.6%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 48.0 4.03e-01 79.5% 76.9%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 49.0 4.53e-01 85.9% 100.0%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 53.0 4.48e-01 100.0% 71.9%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.60 49.0 4.62e-01 93.6% 73.5%
1b43A02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.59 40.0 4.42e-01 93.6% 91.8%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.59 44.0 3.81e-01 82.1% 49.6%
3vskA02 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.59 51.0 4.20e-01 96.2% 90.0%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 46.0 4.50e-01 85.9% 94.0%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.58 49.0 4.84e-01 97.4% 90.1%
1jfzA00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.58 42.0 3.48e-01 78.2% 73.0%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.58 49.0 4.82e-01 97.4% 97.7%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 44.0 3.69e-01 89.7% 46.8%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 4.57e-01 97.4% 100.0%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 52.0 4.71e-01 100.0% 91.2%
4x28C03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 48.0 4.07e-01 100.0% 81.8%
4doyA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 49.0 3.80e-01 100.0% 79.8%
2ahoB02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.56 49.0 4.69e-01 100.0% 92.3%
2uxwA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 50.0 3.82e-01 100.0% 57.5%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 48.0 4.00e-01 100.0% 85.0%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.56 39.0 4.08e-01 83.3% 85.1%
3aq5A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 48.0 4.27e-01 100.0% 66.7%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 49.0 3.85e-01 100.0% 73.1%
2ix5A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 49.0 3.92e-01 100.0% 68.4%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 46.0 3.91e-01 97.4% 60.1%
1r2jA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 49.0 4.01e-01 100.0% 68.1%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 48.0 3.88e-01 100.0% 81.9%
1nigA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.52 43.0 3.56e-01 92.3% 93.8%
4k7bA00 1.20.120.1740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like 0.52 38.0 3.52e-01 87.2% 57.7%
7craA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 46.0 4.36e-01 98.7% 87.0%
4btfA01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.51 43.0 3.98e-01 93.6% 79.0%
2kn6A02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 41.0 4.08e-01 91.0% 100.0%
4tpoA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 43.0 2.80e-01 98.7% 26.1%
3nwoA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 40.0 2.80e-01 92.3% 25.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3988831 148.1.3.256 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28529 0.96 93.0 8.72e-01 100.0% 87.8%
4013315 148.1.3.216 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7069 0.69 52.0 4.84e-01 82.1% 66.0%
3942473 6164.1.1.4 alpha bundles › Bestrophin › Bestrophin › Bestrophin › Bestrophin_2 0.69 60.0 4.07e-01 98.7% 35.7%
3473556 592.1.1.7 alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 0.63 47.0 4.94e-01 88.5% 91.4%
5062170 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 56.0 4.82e-01 100.0% 64.2%
5032409 6049.1.1.0 alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.63 52.0 5.09e-01 94.9% 84.5%
3220832 592.7.1.1 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.62 54.0 5.12e-01 100.0% 82.2%
4554821 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.59 41.0 4.09e-01 76.9% 71.2%
3648850 3567.1.1.93 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Tcp11 0.58 48.0 4.16e-01 93.6% 69.6%
4411856 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.58 45.0 4.22e-01 83.3% 93.7%
4140504 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.58 45.0 4.26e-01 84.6% 93.7%
185159 3552.1.1.1 alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › DUF2063 0.58 49.0 4.77e-01 97.4% 94.4%
5014265 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 44.0 4.31e-01 82.1% 98.8%
4600610 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.57 41.0 3.87e-01 75.6% 64.2%
3575635 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.57 45.0 4.36e-01 85.9% 94.4%
4840 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.57 44.0 3.70e-01 89.7% 47.1%
4576982 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.56 50.0 3.54e-01 100.0% 34.0%
3958203 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.55 49.0 3.79e-01 100.0% 61.7%
3579522 604.1.1.98 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1 0.54 43.0 3.88e-01 85.9% 93.3%
5044474 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.53 45.0 2.94e-01 97.4% 23.5%
4537623 632.13.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like 0.53 42.0 4.29e-01 98.7% 94.7%
4990111 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 41.0 3.70e-01 84.6% 85.5%
3801688 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 42.0 3.80e-01 84.6% 93.3%
4170287 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.53 47.0 3.42e-01 100.0% 37.2%
4287147 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 45.0 3.19e-01 100.0% 58.0%
3520155 4207.1.2.0 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.51 44.0 4.37e-01 100.0% 93.8%
3784738 3755.4.1.43 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Ran-binding 0.51 43.0 3.56e-01 96.2% 79.3%
4999746 109.23.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 0.51 43.0 4.07e-01 93.6% 82.1%
4995204 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 41.0 4.26e-01 92.3% 97.1%
3300012 109.4.1.73 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Uso1_p115_head 0.50 43.0 2.51e-01 96.2% 11.1%
3872242 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 39.0 3.42e-01 83.3% 88.7%
3451306 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 42.0 2.67e-01 96.2% 17.3%
D5 medium residues 403-453_482-507
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 42.0 4.88e-01 71.4% 94.2%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.65 39.0 4.46e-01 72.7% 85.2%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 43.0 4.08e-01 72.7% 59.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 39.0 4.38e-01 71.4% 87.5%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.65e-01 77.9% 90.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 3.91e-01 71.4% 65.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 38.0 4.44e-01 71.4% 92.3%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.99e-01 79.2% 72.7%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 38.0 4.01e-01 75.3% 70.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.00e-01 71.4% 75.0%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.39e-01 75.3% 98.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 38.0 4.21e-01 75.3% 86.4%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 37.0 4.22e-01 71.4% 90.7%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 40.0 3.55e-01 71.4% 73.7%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 41.0 3.62e-01 77.9% 66.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.97e-01 75.3% 91.6%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 40.0 3.26e-01 76.6% 45.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.56 39.0 4.10e-01 75.3% 83.6%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.55 38.0 3.56e-01 71.4% 63.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.79e-01 79.2% 87.5%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.44e-01 75.3% 50.9%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 38.0 3.50e-01 72.7% 88.0%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 3.18e-01 76.6% 95.5%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 41.0 2.61e-01 88.3% 35.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.52 38.0 3.22e-01 79.2% 95.0%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 39.0 3.46e-01 80.5% 60.4%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.38e-01 80.5% 81.8%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 36.0 3.87e-01 76.6% 100.0%
2a8xA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 36.0 3.16e-01 76.6% 82.8%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.76 58.0 5.10e-01 80.5% 85.5%
5058671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 44.0 5.00e-01 72.7% 81.8%
4994957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 45.0 5.26e-01 72.7% 87.3%
3604264 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 52.0 4.73e-01 75.3% 73.0%
4952887 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 43.0 4.91e-01 71.4% 83.6%
4992872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 44.0 4.95e-01 72.7% 87.3%
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 42.0 4.86e-01 75.3% 83.6%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 43.0 4.91e-01 72.7% 85.5%
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 43.0 4.88e-01 71.4% 85.5%
4348606 4.1.1.440 beta barrels › SH3 › SH3 › SH3 › PF27165 0.69 46.0 4.94e-01 75.3% 81.5%
4995678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 44.0 4.96e-01 72.7% 92.7%
3570399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.98e-01 72.7% 84.6%
5025079 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.73e-01 72.7% 87.3%
3976834 4.1.1.156 beta barrels › SH3 › SH3 › SH3 › DUF2158 0.65 39.0 4.63e-01 71.4% 94.0%
4559371 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.76e-01 72.7% 85.7%
3941004 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.29e-01 71.4% 70.0%
3622846 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 38.0 4.45e-01 70.1% 94.0%
3218198 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 38.0 4.40e-01 71.4% 87.3%
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.62 38.0 4.29e-01 72.7% 85.5%
3474715 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 38.0 4.12e-01 71.4% 73.8%
3660922 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.62 39.0 4.24e-01 71.4% 76.9%
4282868 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 43.0 4.51e-01 72.7% 81.4%
5022491 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.61 44.0 4.29e-01 76.6% 77.6%
4032729 4.1.1.168 beta barrels › SH3 › SH3 › SH3 › DUF2187 0.60 40.0 4.46e-01 75.3% 91.4%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.60 41.0 4.30e-01 77.9% 80.0%
4937423 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.03e-01 72.7% 74.1%
3752623 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.59 44.0 4.00e-01 79.2% 90.5%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 40.0 3.24e-01 75.3% 36.6%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.59 38.0 4.38e-01 75.3% 94.4%
4177200 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.58 38.0 4.38e-01 75.3% 94.5%
3945489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 36.0 4.20e-01 71.4% 94.0%
1503651 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 41.0 4.10e-01 76.6% 71.2%
5030431 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.58 45.0 3.44e-01 85.7% 98.9%
4029093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 37.0 2.99e-01 76.6% 32.9%
3484822 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.57 39.0 3.91e-01 76.6% 68.8%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.08e-01 76.6% 97.5%
4016832 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 2.82e-01 88.3% 55.8%
3616622 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.36e-01 75.3% 98.4%
3922426 4.1.1.363 beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.57 40.0 3.45e-01 74.0% 98.3%
3841414 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 39.0 4.06e-01 71.4% 78.6%
3252094 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.69e-01 80.5% 96.5%
3507003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.09e-01 75.3% 90.7%
3266157 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.56 38.0 2.65e-01 70.1% 90.2%
3538619 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 41.0 3.55e-01 81.8% 81.5%
4946028 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.61e-01 71.4% 66.7%
3693741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.97e-01 71.4% 95.7%
3933892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.14e-01 71.4% 95.0%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 36.0 2.66e-01 75.3% 23.6%
3465990 5.1.4.404 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IP5PC_F 0.54 42.0 2.83e-01 87.0% 47.9%
3269549 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 3.40e-01 87.0% 93.5%
3789647 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.06e-01 76.6% 44.5%
3916003 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.53 39.0 3.48e-01 80.5% 91.3%
3853422 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 36.0 3.31e-01 72.7% 57.1%
3930366 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.94e-01 71.4% 93.3%
3781935 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 39.0 3.35e-01 79.2% 68.8%
3262159 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 36.0 3.10e-01 72.7% 50.8%
3230400 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 35.0 3.77e-01 70.1% 95.4%
3250605 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 38.0 3.32e-01 79.2% 57.6%
3542147 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 39.0 3.32e-01 83.1% 55.7%
3279525 295.1.1.25 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF397 0.52 35.0 3.69e-01 75.3% 80.9%
3700775 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.52 37.0 3.50e-01 76.6% 95.8%
3719029 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.50 37.0 3.00e-01 83.1% 38.2%
3269529 5.1.4.605 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PH 0.50 39.0 2.57e-01 88.3% 46.0%