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SRR1747052_scaffold_2_prodigal-single.1__X__X__00025
Bact-VirSRR1747052_scaffold_2_prodigal-single.1__X__X__00025
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-154
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.86 | 63.0 | 5.23e-01 | 98.7% | 46.7% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.83 | 61.0 | 5.14e-01 | 99.3% | 47.1% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.81 | 59.0 | 5.41e-01 | 98.7% | 58.5% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.81 | 60.0 | 6.71e-01 | 100.0% | 96.6% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 63.0 | 5.24e-01 | 100.0% | 49.8% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 60.0 | 5.06e-01 | 97.4% | 48.7% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 60.0 | 6.67e-01 | 99.3% | 97.5% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.79 | 61.0 | 6.72e-01 | 98.0% | 97.6% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 60.0 | 5.00e-01 | 98.7% | 48.2% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 62.0 | 5.09e-01 | 100.0% | 48.2% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.78 | 61.0 | 5.06e-01 | 99.3% | 49.0% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 60.0 | 4.96e-01 | 99.3% | 47.7% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 58.0 | 4.88e-01 | 98.7% | 48.8% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 60.0 | 6.41e-01 | 98.7% | 93.8% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 60.0 | 4.99e-01 | 98.7% | 48.6% |
| 5aguA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 59.0 | 6.47e-01 | 100.0% | 96.8% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 55.0 | 6.30e-01 | 98.0% | 100.0% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.74 | 58.0 | 6.30e-01 | 98.0% | 96.1% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.74 | 53.0 | 4.61e-01 | 94.7% | 50.2% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.73 | 54.0 | 5.96e-01 | 100.0% | 93.5% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.73 | 57.0 | 4.79e-01 | 100.0% | 49.4% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.73 | 60.0 | 5.75e-01 | 97.4% | 75.4% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.72 | 64.0 | 5.19e-01 | 100.0% | 52.4% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.71 | 23.0 | 4.02e-01 | 92.7% | 93.5% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.70 | 51.0 | 4.39e-01 | 99.3% | 49.6% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.68 | 60.0 | 4.77e-01 | 99.3% | 48.7% |
| 2gu1A02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 37.0 | 4.34e-01 | 98.0% | 82.7% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.59 | 35.0 | 4.13e-01 | 100.0% | 84.5% |
| 3sluA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 33.0 | 3.51e-01 | 98.0% | 64.2% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.53 | 28.0 | 3.31e-01 | 72.2% | 73.5% |
| 3mr0A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 30.0 | 3.48e-01 | 91.4% | 75.5% |
| 1c3kA00 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.51 | 36.0 | 3.75e-01 | 92.1% | 76.2% |
| 4rnyA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 33.0 | 3.39e-01 | 98.0% | 66.0% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4939065 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.86 | 64.0 | 7.12e-01 | 99.3% | 95.8% |
| 4980359 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.84 | 62.0 | 6.93e-01 | 99.3% | 95.8% |
| 5990 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.83 | 61.0 | 6.79e-01 | 99.3% | 94.3% |
| 5039026 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.83 | 60.0 | 6.68e-01 | 99.3% | 93.3% |
| 4936049 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.83 | 61.0 | 6.82e-01 | 99.3% | 95.8% |
| 4059128 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.82 | 61.0 | 6.79e-01 | 99.3% | 95.8% |
| 4941928 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.82 | 63.0 | 6.98e-01 | 100.0% | 99.2% |
| 1871497 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.82 | 59.0 | 6.61e-01 | 98.7% | 94.1% |
| 5070586 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.81 | 63.0 | 6.85e-01 | 99.3% | 96.0% |
| 4943404 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.81 | 64.0 | 6.92e-01 | 100.0% | 95.4% |
| 3788095 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.81 | 66.0 | 6.94e-01 | 100.0% | 94.1% |
| 5056757 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.81 | 62.0 | 6.82e-01 | 100.0% | 96.0% |
| 5027066 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.80 | 62.0 | 6.75e-01 | 100.0% | 96.0% |
| 162047 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.80 | 62.0 | 6.67e-01 | 100.0% | 94.5% |
| 4956739 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.80 | 61.0 | 6.66e-01 | 99.3% | 95.2% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.80 | 60.0 | 6.59e-01 | 100.0% | 94.3% |
| 3613685 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.80 | 67.0 | 7.01e-01 | 100.0% | 95.0% |
| 4302174 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.80 | 60.0 | 6.60e-01 | 99.3% | 94.4% |
| 5027067 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 60.0 | 6.70e-01 | 97.4% | 98.3% |
| 4987602 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.79 | 60.0 | 6.60e-01 | 98.7% | 95.2% |
| 5044014 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.79 | 59.0 | 6.63e-01 | 97.4% | 100.0% |
| 4057537 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.79 | 60.0 | 6.52e-01 | 99.3% | 94.4% |
| 1822927 | 227.1.1.2 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 62.0 | 6.03e-01 | 99.3% | 75.5% |
| 2392830 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.79 | 61.0 | 6.55e-01 | 100.0% | 93.1% |
| 3397928 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.79 | 62.0 | 6.76e-01 | 98.7% | 99.2% |
| 3478161 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.78 | 64.0 | 6.81e-01 | 98.7% | 96.3% |
| 5078494 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.78 | 60.0 | 6.51e-01 | 99.3% | 95.2% |
| 4995027 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.78 | 58.0 | 6.35e-01 | 99.3% | 92.8% |
| 3346536 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.78 | 65.0 | 6.68e-01 | 100.0% | 91.0% |
| 4998584 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.78 | 64.0 | 6.74e-01 | 100.0% | 96.3% |
| 4934001 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.78 | 62.0 | 6.75e-01 | 100.0% | 100.0% |
| 3251867 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.78 | 61.0 | 6.55e-01 | 100.0% | 95.4% |
| 3719938 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.78 | 65.0 | 6.76e-01 | 100.0% | 95.0% |
| 3597091 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.78 | 59.0 | 6.48e-01 | 100.0% | 96.0% |
| 2442100 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.78 | 62.0 | 6.49e-01 | 100.0% | 91.9% |
| 3602548 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.77 | 59.0 | 6.41e-01 | 99.3% | 95.2% |
| 5052550 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.77 | 61.0 | 6.67e-01 | 100.0% | 99.2% |
| 3244229 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.77 | 59.0 | 6.45e-01 | 98.0% | 96.8% |
| 3719143 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.77 | 62.0 | 6.57e-01 | 100.0% | 94.8% |
| 5039027 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.77 | 58.0 | 6.44e-01 | 100.0% | 99.2% |
| 3251868 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.77 | 66.0 | 6.88e-01 | 100.0% | 97.1% |
| 4646871 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 59.0 | 6.39e-01 | 100.0% | 96.0% |
| 3936915 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.76 | 61.0 | 6.49e-01 | 99.3% | 96.2% |
| 2834340 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.76 | 63.0 | 6.55e-01 | 100.0% | 94.2% |
| 3625037 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.76 | 63.0 | 6.60e-01 | 98.0% | 96.3% |
| 3256903 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.76 | 61.0 | 6.49e-01 | 100.0% | 94.1% |
| 4956740 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 59.0 | 6.41e-01 | 100.0% | 97.6% |
| 3599554 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.76 | 69.0 | 6.96e-01 | 100.0% | 96.0% |
| 3798354 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.76 | 62.0 | 6.55e-01 | 99.3% | 96.3% |
| 3623607 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.76 | 63.0 | 6.51e-01 | 100.0% | 94.3% |
| 5010547 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.76 | 27.0 | 3.98e-01 | 96.7% | 71.4% |
| 4172290 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 59.0 | 6.28e-01 | 99.3% | 93.8% |
| 3351110 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.75 | 58.0 | 6.43e-01 | 97.4% | 100.0% |
| 3789625 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 62.0 | 6.49e-01 | 98.0% | 96.3% |
| 5000468 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.75 | 59.0 | 6.42e-01 | 99.3% | 98.4% |
| 3256904 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.75 | 59.0 | 6.38e-01 | 98.7% | 98.4% |
| 3743107 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.75 | 65.0 | 6.73e-01 | 100.0% | 97.1% |
| 3625038 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.75 | 62.0 | 6.48e-01 | 99.3% | 93.6% |
| 4232371 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 58.0 | 6.37e-01 | 100.0% | 100.0% |
| 4043935 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.75 | 60.0 | 6.43e-01 | 100.0% | 96.9% |
| 3939755 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 62.0 | 6.30e-01 | 100.0% | 89.2% |
| 143267 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.75 | 57.0 | 6.19e-01 | 99.3% | 94.5% |
| 5074321 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.74 | 56.0 | 6.14e-01 | 100.0% | 95.2% |
| 4038410 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.74 | 63.0 | 6.54e-01 | 98.7% | 96.4% |
| 5000467 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.74 | 62.0 | 6.54e-01 | 100.0% | 98.5% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.74 | 57.0 | 5.75e-01 | 99.3% | 79.9% |
| 3789624 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.74 | 61.0 | 6.29e-01 | 99.3% | 93.6% |
| 3256386 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.72 | 58.0 | 6.13e-01 | 100.0% | 94.1% |
| 3738030 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.72 | 57.0 | 6.03e-01 | 98.7% | 92.6% |
| 3551142 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.72 | 57.0 | 5.86e-01 | 99.3% | 86.2% |
| 3480669 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.72 | 63.0 | 6.52e-01 | 100.0% | 97.2% |
| 3507498 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.72 | 64.0 | 6.49e-01 | 100.0% | 94.7% |
| 3598259 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 59.0 | 6.25e-01 | 98.7% | 96.3% |
| 3503503 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.72 | 63.0 | 6.46e-01 | 98.7% | 96.6% |
| 3702817 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.71 | 58.0 | 6.16e-01 | 100.0% | 96.3% |
| 3743106 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.71 | 62.0 | 6.33e-01 | 98.0% | 95.9% |
| 3787933 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.71 | 67.0 | 6.58e-01 | 100.0% | 95.0% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.71 | 63.0 | 6.38e-01 | 100.0% | 95.3% |
| 3534499 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.71 | 61.0 | 6.29e-01 | 99.3% | 96.6% |
| 4426056 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.70 | 61.0 | 6.07e-01 | 100.0% | 89.7% |
| 3722114 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 65.0 | 6.49e-01 | 100.0% | 96.8% |
| 3804177 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 62.0 | 6.36e-01 | 99.3% | 97.9% |
| 4014655 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 60.0 | 6.18e-01 | 100.0% | 95.2% |
| 3507499 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.70 | 58.0 | 6.11e-01 | 98.0% | 97.8% |
| 3785352 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.69 | 65.0 | 6.28e-01 | 100.0% | 92.1% |
| 3596476 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.69 | 59.0 | 6.11e-01 | 98.0% | 96.5% |
| 4608521 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.69 | 64.0 | 5.80e-01 | 100.0% | 78.0% |
| 1512999 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.61 | 36.0 | 4.27e-01 | 98.7% | 86.1% |
| 3386481 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.60 | 35.0 | 4.20e-01 | 98.7% | 86.0% |
| 1606365 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.56 | 34.0 | 3.92e-01 | 98.0% | 83.8% |
D2
high
residues 169-297
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.83 | 68.0 | 5.50e-01 | 100.0% | 48.7% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 70.0 | 5.52e-01 | 100.0% | 49.2% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 69.0 | 5.40e-01 | 100.0% | 47.8% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.79 | 63.0 | 6.68e-01 | 95.3% | 94.7% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 64.0 | 5.57e-01 | 100.0% | 58.0% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 63.0 | 6.58e-01 | 96.9% | 90.8% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 60.0 | 6.44e-01 | 95.3% | 94.7% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.74 | 59.0 | 6.06e-01 | 97.7% | 87.9% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.73 | 65.0 | 5.13e-01 | 100.0% | 47.9% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.70 | 64.0 | 5.77e-01 | 100.0% | 97.7% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.69 | 63.0 | 4.88e-01 | 98.4% | 49.4% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.64 | 57.0 | 4.46e-01 | 99.2% | 45.3% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.55 | 29.0 | 3.28e-01 | 71.3% | 64.6% |
| 4oocA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.50 | 37.0 | 2.99e-01 | 99.2% | 37.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4542774 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.80 | 68.0 | 7.06e-01 | 100.0% | 96.7% |
| 4437554 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.78 | 67.0 | 6.79e-01 | 100.0% | 92.8% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.78 | 64.0 | 6.62e-01 | 100.0% | 91.9% |
| 3478160 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.77 | 69.0 | 7.02e-01 | 100.0% | 96.9% |
| 5047575 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 64.0 | 6.53e-01 | 97.7% | 91.2% |
| 4360456 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.76 | 66.0 | 6.58e-01 | 100.0% | 91.5% |
| 3503502 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.76 | 70.0 | 7.00e-01 | 100.0% | 97.7% |
| 3256903 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.76 | 69.0 | 6.87e-01 | 100.0% | 93.3% |
| 3397928 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.76 | 66.0 | 6.73e-01 | 96.9% | 95.2% |
| 138072 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.75 | 67.0 | 6.74e-01 | 100.0% | 93.1% |
| 2987540 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.75 | 60.0 | 6.06e-01 | 98.4% | 83.8% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 68.0 | 6.82e-01 | 100.0% | 95.4% |
| 1290662 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.74 | 67.0 | 6.47e-01 | 100.0% | 86.0% |
| 4980359 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.74 | 60.0 | 6.24e-01 | 96.9% | 90.8% |
| 5037344 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.74 | 62.0 | 6.41e-01 | 96.1% | 94.2% |
| 4987602 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.74 | 62.0 | 6.29e-01 | 96.1% | 90.4% |
| 4096140 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.74 | 62.0 | 6.32e-01 | 96.1% | 91.2% |
| 3787700 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.73 | 68.0 | 6.40e-01 | 100.0% | 98.7% |
| 5070586 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.73 | 61.0 | 6.28e-01 | 96.9% | 91.2% |
| 5078494 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.73 | 61.0 | 6.20e-01 | 96.9% | 90.4% |
| 4026073 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.73 | 65.0 | 6.61e-01 | 96.9% | 97.6% |
| 3722114 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.73 | 66.0 | 6.20e-01 | 98.4% | 92.9% |
| 2325189 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.72 | 65.0 | 6.38e-01 | 100.0% | 90.5% |
| 3598259 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 66.0 | 6.48e-01 | 96.1% | 91.9% |
| 5000467 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.70 | 64.0 | 6.35e-01 | 97.7% | 94.1% |
| 3743107 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.70 | 63.0 | 6.18e-01 | 97.7% | 91.4% |
| 4466445 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 65.0 | 6.05e-01 | 99.2% | 92.9% |
| 2834343 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 64.0 | 5.69e-01 | 100.0% | 94.0% |
| 3719938 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.69 | 65.0 | 6.32e-01 | 100.0% | 92.9% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.69 | 63.0 | 5.96e-01 | 97.7% | 90.0% |
| 3789624 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.69 | 62.0 | 6.09e-01 | 97.7% | 90.7% |
| 3625038 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.68 | 61.0 | 6.00e-01 | 97.7% | 90.7% |
| 1178585 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.64 | 57.0 | 5.61e-01 | 99.2% | 92.2% |
| 4207610 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.52 | 41.0 | 3.94e-01 | 85.3% | 96.0% |
| 3186366 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.50 | 41.0 | 3.28e-01 | 87.6% | 77.3% |