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SRR1747052_scaffold_2_prodigal-single.1__X__X__00065
Bact-VirSRR1747052_scaffold_2_prodigal-single.1__X__X__00065
Identity
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-246
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25283.2 best | DUF7873 | 114.4 | 1.00e-32 | 99.2% | 92.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.59 | 18.0 | 2.87e-01 | 92.3% | 65.0% |
| 2ea9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 15.0 | 2.45e-01 | 82.1% | 55.3% |
| 5eqjB02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 28.0 | 2.93e-01 | 83.7% | 53.4% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 18.0 | 2.79e-01 | 72.8% | 75.8% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 19.0 | 2.79e-01 | 72.4% | 74.3% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.50 | 18.0 | 2.63e-01 | 81.3% | 67.6% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 27.0 | 3.31e-01 | 89.8% | 78.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002020 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.56 | 18.0 | 2.59e-01 | 88.6% | 54.8% |
| 3847690 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.56 | 27.0 | 3.27e-01 | 83.7% | 66.9% |
| 3353684 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.54 | 10.0 | 2.88e-01 | 75.6% | 100.0% |