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SRR1747052_scaffold_2_prodigal-single.1__X__X__00307
Bact-VirSRR1747052_scaffold_2_prodigal-single.1__X__X__00307
Identity
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-56
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c5wA01 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.74 | 53.0 | 4.32e-01 | 76.9% | 92.8% |
| 2qc5A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 47.0 | 2.94e-01 | 75.0% | 21.1% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.66 | 46.0 | 3.22e-01 | 94.2% | 23.3% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.65 | 43.0 | 3.80e-01 | 98.1% | 45.0% |
| 1ri9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 41.0 | 3.61e-01 | 100.0% | 41.6% |
| 5lm7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 46.0 | 4.06e-01 | 76.9% | 59.0% |
| 4wh5A00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.63 | 45.0 | 3.24e-01 | 76.9% | 40.5% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 46.0 | 4.51e-01 | 96.2% | 74.1% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 42.0 | 2.63e-01 | 73.1% | 20.7% |
| 2auwA01 | 3.30.2020.10 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain | 0.60 | 44.0 | 3.84e-01 | 80.8% | 91.5% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.59 | 42.0 | 3.20e-01 | 76.9% | 43.0% |
| 3k8rA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.59 | 49.0 | 4.56e-01 | 96.2% | 100.0% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 41.0 | 3.80e-01 | 76.9% | 58.9% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 43.0 | 3.48e-01 | 100.0% | 39.8% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 46.0 | 3.76e-01 | 94.2% | 74.5% |
| 6ixwB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 48.0 | 3.47e-01 | 100.0% | 67.9% |
| 5nahA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 39.0 | 2.47e-01 | 80.8% | 95.7% |
| 1b5fB00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.56 | 39.0 | 3.37e-01 | 75.0% | 82.8% |
| 2b3yA05 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.55 | 45.0 | 3.03e-01 | 96.2% | 29.4% |
| 3p34A02 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.55 | 48.0 | 3.92e-01 | 100.0% | 64.9% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 4.00e-01 | 100.0% | 85.1% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 48.0 | 4.01e-01 | 100.0% | 77.5% |
| 1vyhC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 47.0 | 2.93e-01 | 100.0% | 96.3% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.54 | 37.0 | 3.47e-01 | 75.0% | 75.7% |
| 2re3A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.54 | 45.0 | 4.16e-01 | 100.0% | 95.7% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.53 | 45.0 | 3.61e-01 | 98.1% | 79.8% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.53 | 41.0 | 3.98e-01 | 90.4% | 75.9% |
| 7apkF01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 2.83e-01 | 100.0% | 92.4% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.53 | 33.0 | 3.41e-01 | 100.0% | 66.7% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 37.0 | 3.75e-01 | 76.9% | 98.0% |
| 4ci8A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 42.0 | 2.70e-01 | 98.1% | 87.5% |
| 1apyB00 | 3.60.20.30 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase | 0.52 | 41.0 | 3.17e-01 | 96.2% | 87.9% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 43.0 | 4.30e-01 | 96.2% | 90.9% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 40.0 | 3.46e-01 | 86.5% | 69.8% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 39.0 | 3.72e-01 | 100.0% | 71.4% |
| 2mnjB00 | 2.60.40.4160 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 40.0 | 3.50e-01 | 98.1% | 53.4% |
| 2k5nA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 43.0 | 3.95e-01 | 100.0% | 82.4% |
| 2rf4E02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 44.0 | 3.81e-01 | 98.1% | 95.2% |
| 3udfA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 43.0 | 3.65e-01 | 100.0% | 77.9% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 36.0 | 3.37e-01 | 76.9% | 71.4% |
| 1quqB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 39.0 | 3.16e-01 | 90.4% | 69.3% |
| 3ol0B00 | 6.20.90.30 | Special › Other non-globular › SH3 type barrels. › | 0.51 | 32.0 | 3.45e-01 | 96.2% | 80.5% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 32.0 | 3.24e-01 | 100.0% | 62.3% |
| 4bpnW02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.50 | 40.0 | 4.06e-01 | 94.2% | 94.1% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3242411 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.71 | 53.0 | 4.16e-01 | 80.8% | 85.5% |
| 3387951 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 51.0 | 5.49e-01 | 80.8% | 100.0% |
| 3930660 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.69 | 50.0 | 4.09e-01 | 76.9% | 96.9% |
| 3249256 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 48.0 | 2.89e-01 | 82.7% | 18.9% |
| 1031172 | 4.1.1.113 ↗ | beta barrels › SH3 › SH3 › SH3 › TraI_2B | 0.63 | 44.0 | 4.00e-01 | 100.0% | 52.8% |
| 5063311 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.63 | 39.0 | 4.18e-01 | 100.0% | 73.3% |
| 5054192 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.62 | 45.0 | 3.73e-01 | 80.8% | 98.0% |
| 3698104 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.61 | 51.0 | 4.14e-01 | 96.2% | 90.4% |
| 4459163 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.61 | 49.0 | 3.73e-01 | 90.4% | 69.6% |
| 3263031 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 39.0 | 3.74e-01 | 100.0% | 53.8% |
| 3722737 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 42.0 | 3.03e-01 | 76.9% | 26.1% |
| 4045712 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.59 | 50.0 | 3.27e-01 | 100.0% | 26.2% |
| 1884741 | 4.1.1.130 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_19 | 0.58 | 45.0 | 4.41e-01 | 100.0% | 76.3% |
| 4152624 | 375.1.1.17 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1f | 0.58 | 38.0 | 4.16e-01 | 71.2% | 87.5% |
| 3408188 | 375.3.1.2 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL | 0.58 | 45.0 | 4.45e-01 | 100.0% | 93.3% |
| 4654223 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.57 | 47.0 | 4.11e-01 | 96.2% | 90.6% |
| 1489659 | 375.1.1.17 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1f | 0.57 | 36.0 | 3.77e-01 | 100.0% | 70.8% |
| 3409742 | 391.1.2.3 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC | 0.57 | 39.0 | 3.48e-01 | 100.0% | 46.4% |
| 3933293 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 39.0 | 3.87e-01 | 100.0% | 69.0% |
| 3226306 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 39.0 | 3.14e-01 | 75.0% | 41.7% |
| 3700076 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.56 | 44.0 | 2.71e-01 | 100.0% | 51.6% |
| 3584364 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 39.0 | 3.98e-01 | 76.9% | 78.0% |
| 3468385 | 5.1.4.343 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_WDHD1_1st | 0.55 | 43.0 | 3.05e-01 | 94.2% | 36.0% |
| 3840052 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 33.0 | 3.62e-01 | 100.0% | 75.0% |
| 4000169 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.55 | 46.0 | 3.01e-01 | 100.0% | 29.2% |
| 3228787 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.55 | 45.0 | 2.89e-01 | 100.0% | 29.3% |
| 3918252 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 38.0 | 3.99e-01 | 75.0% | 100.0% |
| 3926041 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.54 | 38.0 | 2.38e-01 | 84.6% | 12.3% |
| 3231308 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 45.0 | 2.97e-01 | 96.2% | 27.6% |
| 3914367 | 5.1.2.44 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_HPS5 | 0.53 | 45.0 | 3.32e-01 | 100.0% | 58.8% |
| 3408265 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.52 | 43.0 | 2.83e-01 | 100.0% | 30.8% |
| 3731161 | 220.1.1.44 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N | 0.52 | 41.0 | 3.86e-01 | 100.0% | 71.4% |
| 3510676 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 34.0 | 2.90e-01 | 98.1% | 35.8% |
| 3455792 | 5.1.4.319 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st | 0.52 | 40.0 | 2.57e-01 | 92.3% | 22.9% |
| 3823001 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.52 | 38.0 | 3.17e-01 | 86.5% | 65.5% |
| 3496355 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 33.0 | 3.30e-01 | 98.1% | 61.8% |
| 3581336 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 38.0 | 3.19e-01 | 90.4% | 55.5% |
| 4038705 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.51 | 34.0 | 3.23e-01 | 98.1% | 52.3% |
| 3476178 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 41.0 | 3.32e-01 | 100.0% | 93.3% |
| 5056316 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.50 | 34.0 | 2.16e-01 | 73.1% | 10.7% |
| 3529708 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.50 | 36.0 | 3.24e-01 | 76.9% | 65.3% |
| 3999786 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.52e-01 | 78.8% | 71.7% |
| 5068015 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.50 | 40.0 | 3.70e-01 | 100.0% | 68.0% |