←Back to structures

SRR1747052_scaffold_2_prodigal-single.1__X__X__00336

Bact-Vir

SRR1747052_scaffold_2_prodigal-single.1__X__X__00336

Identity

Kingdom:
phage

Quality

87.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.80 43.0 4.95e-01 77.0% 72.7%
3laeA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.71 41.0 3.75e-01 82.0% 43.2%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.70 50.0 4.40e-01 75.4% 59.3%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 48.0 3.99e-01 75.4% 62.4%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.99e-01 77.0% 88.7%
2p4pA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.68 40.0 3.59e-01 80.3% 41.7%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 58.0 5.01e-01 100.0% 92.3%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.51e-01 73.8% 86.7%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 55.0 4.85e-01 96.7% 94.3%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.62 45.0 4.54e-01 77.0% 95.2%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 56.0 4.91e-01 100.0% 72.2%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 38.0 3.48e-01 82.0% 46.3%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 49.0 3.98e-01 85.2% 72.5%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 40.0 2.58e-01 70.5% 31.0%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 40.0 3.74e-01 72.1% 86.7%
2f9hA00 2.40.33.40 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › Phosphotransferase system, glucitol/sorbitol-specific IIA component 0.58 52.0 4.11e-01 98.4% 98.3%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.43e-01 75.4% 94.0%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 37.0 3.32e-01 82.0% 46.0%
1ddgA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 50.0 4.10e-01 100.0% 93.0%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 50.0 3.97e-01 100.0% 91.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.66e-01 100.0% 89.2%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 47.0 3.46e-01 98.4% 55.6%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 3.48e-01 96.7% 45.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 49.0 4.69e-01 100.0% 89.9%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.53 38.0 3.79e-01 77.0% 93.5%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 3.19e-01 86.9% 64.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 46.0 4.62e-01 100.0% 96.8%
4ympA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 2.95e-01 72.1% 92.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 45.0 4.21e-01 100.0% 88.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.81 57.0 6.26e-01 75.4% 90.0%
5015084 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.78 48.0 4.87e-01 80.3% 63.3%
5049818 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.78 48.0 4.06e-01 78.7% 40.0%
4933883 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.77 43.0 4.74e-01 78.7% 68.0%
3960335 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.76 48.0 4.61e-01 77.0% 57.1%
5045021 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.74 45.0 4.54e-01 78.7% 61.7%
3649175 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 56.0 3.41e-01 100.0% 13.7%
4956032 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.73 43.0 4.38e-01 77.0% 60.0%
4956395 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.73 44.0 4.62e-01 80.3% 67.3%
5043697 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 50.0 4.97e-01 72.1% 80.0%
3805030 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.71 48.0 4.71e-01 78.7% 66.2%
4995824 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 51.0 4.81e-01 77.0% 71.2%
3713527 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.69 49.0 3.09e-01 73.8% 28.3%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.30e-01 77.0% 92.7%
5016579 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 52.0 4.82e-01 100.0% 64.6%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.05e-01 77.0% 85.0%
4369736 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 45.0 5.15e-01 73.8% 93.3%
4945827 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 58.0 5.18e-01 100.0% 67.8%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.15e-01 77.0% 85.5%
3599398 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 57.0 4.95e-01 100.0% 63.0%
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.98e-01 75.4% 83.6%
3251994 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 47.0 3.64e-01 73.8% 41.1%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.65 47.0 4.19e-01 75.4% 54.1%
3448975 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.65 46.0 4.58e-01 75.4% 93.8%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.24e-01 100.0% 90.9%
3933549 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 47.0 2.90e-01 77.0% 25.3%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.93e-01 77.0% 87.3%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.64 56.0 4.52e-01 100.0% 87.5%
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 5.03e-01 100.0% 100.0%
4995901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.76e-01 75.4% 83.6%
4998726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.14e-01 75.4% 57.5%
3490689 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 46.0 4.39e-01 77.0% 87.1%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.52e-01 100.0% 66.3%
3380390 4.1.1.282 ↗ beta barrels › SH3 › SH3 › SH3 › GUB_WAK_bind 0.61 45.0 4.48e-01 78.7% 80.0%
4033299 4.1.1.375 ↗ beta barrels › SH3 › SH3 › SH3 › PF28472 0.61 45.0 3.85e-01 77.0% 50.5%
4010317 4.1.1.395 ↗ beta barrels › SH3 › SH3 › SH3 › PF27398 0.61 48.0 4.78e-01 96.7% 80.0%
3596994 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.47e-01 73.8% 98.0%
3743614 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 40.0 4.03e-01 70.5% 85.0%
3492018 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.30e-01 100.0% 73.3%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 50.0 4.82e-01 98.4% 92.9%
4026301 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 42.0 3.90e-01 82.0% 88.7%
3732571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.94e-01 72.1% 100.0%
4077893 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 40.0 2.42e-01 86.9% 11.9%
3828749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 47.0 4.39e-01 100.0% 88.0%
3940477 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.52 44.0 4.26e-01 98.4% 97.1%
5060707 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.52 37.0 3.37e-01 77.0% 68.2%
D2 high residues 81-141
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nnwB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 35.0 2.45e-01 86.9% 16.3%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.54 37.0 2.89e-01 75.4% 59.7%
1zoyA04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.53 31.0 3.06e-01 72.1% 50.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3395773 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 2.89e-01 90.2% 45.6%
3441614 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 41.0 3.07e-01 95.1% 96.8%
3305241 2003.1.5.153 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.50 41.0 3.04e-01 95.1% 96.1%
D3 high residues 169-257_411-446
PDB
Domain cluster: rep: IMGVR_UViG_3300010353_001977-3300010353-Ga0116236_100130181__D426-491_635-670
D4 high residues 269-407
PDB
Domain cluster: rep: AP019525.1__BBI90704.1__X__00004__D21-157
D5 high residues 455-501
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.84 50.0 2.89e-01 80.9% 7.8%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.80 59.0 4.58e-01 85.1% 36.5%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.80 48.0 4.10e-01 93.6% 39.4%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.80 51.0 3.25e-01 80.9% 14.9%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.77 46.0 4.15e-01 100.0% 42.9%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.74 47.0 2.99e-01 87.2% 13.4%
1cp9A01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.71 52.0 3.64e-01 78.7% 25.3%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 4.48e-01 91.5% 77.9%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.70 44.0 3.55e-01 89.4% 34.1%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.24e-01 87.2% 84.0%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.69 54.0 4.01e-01 89.4% 32.3%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 51.0 3.11e-01 78.7% 28.6%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 3.98e-01 85.1% 88.3%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 47.0 3.94e-01 72.3% 78.5%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.68 46.0 3.13e-01 78.7% 18.8%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.66 52.0 4.48e-01 85.1% 63.4%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 52.0 3.09e-01 91.5% 31.7%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.04e-01 89.4% 83.5%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.64 55.0 3.49e-01 95.7% 65.2%
1aroP05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.64 53.0 3.47e-01 95.7% 69.4%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 45.0 3.55e-01 91.5% 34.6%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 47.0 3.28e-01 83.0% 55.8%
3mmyB00 1.10.10.2360 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 34.0 3.36e-01 70.2% 49.0%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.62 56.0 3.47e-01 100.0% 46.5%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.61 54.0 3.85e-01 100.0% 36.0%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 41.0 3.27e-01 72.3% 79.4%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.61 48.0 3.11e-01 87.2% 39.5%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.60 51.0 3.57e-01 95.7% 54.9%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 41.0 3.38e-01 87.2% 37.9%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.69e-01 93.6% 58.3%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.58 39.0 3.36e-01 70.2% 48.0%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 51.0 3.52e-01 100.0% 63.4%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.57 44.0 3.65e-01 85.1% 100.0%
2peeB02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 43.0 3.25e-01 89.4% 62.6%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.55 39.0 2.82e-01 83.0% 22.5%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 41.0 3.28e-01 87.2% 76.9%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 2.99e-01 72.3% 49.4%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.53 39.0 2.55e-01 83.0% 56.7%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.53 37.0 3.27e-01 72.3% 92.5%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.53 37.0 3.20e-01 76.6% 48.7%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.53 35.0 3.21e-01 70.2% 70.0%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.53 38.0 3.11e-01 80.9% 43.8%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 2.86e-01 83.0% 47.2%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.50 44.0 3.32e-01 95.7% 48.6%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960610 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.93 54.0 3.33e-01 91.5% 13.0%
3227661 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.86 63.0 3.69e-01 76.6% 46.2%
3303720 3336.1.1.1 ↗ alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.82 57.0 3.27e-01 83.0% 8.7%
3598920 7573.1.1.0 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.82 50.0 3.13e-01 87.2% 12.9%
3888499 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.80 50.0 3.12e-01 87.2% 13.3%
3690229 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.80 50.0 3.15e-01 87.2% 14.0%
4026519 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.79 67.0 4.90e-01 100.0% 38.5%
3742561 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.79 49.0 3.13e-01 87.2% 14.0%
4947471 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.77 52.0 3.25e-01 72.3% 13.1%
4928248 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 62.0 4.40e-01 87.2% 65.4%
3627597 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 64.0 3.81e-01 100.0% 12.4%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.75 54.0 4.12e-01 76.6% 100.0%
3483425 3745.1.1.0 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger 0.74 61.0 3.52e-01 91.5% 67.9%
3252037 109.3.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 0.74 43.0 2.81e-01 74.5% 15.1%
3508428 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 52.0 3.50e-01 76.6% 21.7%
3789199 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.73 54.0 4.12e-01 80.9% 33.0%
None — 0.73 60.0 3.44e-01 91.5% 68.9%
4313828 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 54.0 3.35e-01 80.9% 61.1%
3865596 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.72 59.0 3.38e-01 91.5% 71.6%
3290062 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 48.0 2.91e-01 87.2% 11.3%
3731198 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.72 58.0 3.35e-01 91.5% 27.9%
3700547 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.72 57.0 3.12e-01 85.1% 15.1%
4968695 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.72 51.0 3.48e-01 74.5% 62.5%
3284000 4107.1.1.2 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › zf-CGNR 0.71 58.0 3.87e-01 89.4% 29.8%
3444901 4954.1.1.0 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.71 50.0 3.34e-01 72.3% 47.4%
3718707 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.71 59.0 3.35e-01 95.7% 38.0%
3253762 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 42.0 3.53e-01 85.1% 35.0%
3701641 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.70 58.0 3.66e-01 95.7% 43.8%
4505103 7581.1.1.0 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.70 50.0 3.52e-01 76.6% 64.0%
3547409 604.1.1.153 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.70 53.0 3.38e-01 87.2% 19.0%
3600358 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.69 57.0 3.67e-01 95.7% 56.7%
3798928 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.68 57.0 3.23e-01 89.4% 23.4%
3587631 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.68 55.0 3.83e-01 85.1% 32.1%
3459249 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.68 52.0 3.83e-01 83.0% 32.5%
5078418 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.68 57.0 3.56e-01 95.7% 16.7%
3700317 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.68 55.0 3.52e-01 91.5% 26.8%
4023956 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.68 60.0 4.35e-01 100.0% 38.5%
4028041 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.67 54.0 3.29e-01 85.1% 19.0%
5077287 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.67 54.0 3.38e-01 89.4% 16.4%
5010647 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.66 58.0 3.68e-01 97.9% 22.7%
3255946 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 45.0 3.84e-01 74.5% 52.5%
3416523 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.65 46.0 3.17e-01 76.6% 85.3%
4945655 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 43.0 3.45e-01 74.5% 34.0%
3962772 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.63 52.0 3.63e-01 89.4% 85.7%
3332006 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.62 45.0 3.37e-01 78.7% 60.0%
4532986 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.62 40.0 3.70e-01 70.2% 47.7%
4523828 101.26.1.2 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.60 46.0 3.30e-01 83.0% 28.6%
3924318 6166.1.1.0 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 0.59 53.0 3.49e-01 100.0% 50.8%
5010819 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.35e-01 91.5% 78.0%
4944096 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.58 41.0 3.01e-01 74.5% 40.3%
3627409 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.58 53.0 3.44e-01 100.0% 64.0%
4067342 5069.1.1.15 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.58 52.0 3.08e-01 100.0% 55.3%
3198300 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 50.0 3.25e-01 95.7% 69.8%
5077402 2007.15.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase 0.58 45.0 3.24e-01 100.0% 40.5%
3469215 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 49.0 2.85e-01 100.0% 25.8%
4154378 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.57 38.0 3.46e-01 70.2% 49.2%
5048181 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.56 40.0 2.92e-01 85.1% 33.5%
3231765 64.1.1.19 ↗ beta meanders › WW domain-like › WW domain › WW domain › FBA_2 0.55 43.0 3.35e-01 93.6% 85.8%
3622456 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.55 46.0 3.52e-01 95.7% 85.5%
3465836 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 2.97e-01 72.3% 74.0%
5057091 377.12.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 › Ribosomal_L34e 0.54 46.0 3.45e-01 97.9% 45.0%
3363114 325.1.7.25 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PORR 0.54 47.0 3.74e-01 97.9% 50.0%
4250601 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.54 45.0 3.08e-01 95.7% 48.2%
4388283 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.53 37.0 3.24e-01 74.5% 60.0%
4441043 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.52 39.0 2.73e-01 83.0% 48.8%
3961811 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 40.0 2.91e-01 97.9% 94.5%