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SRR1747052_scaffold_7_prodigal-single.1__X__X__00024
Bact-VirSRR1747052_scaffold_7_prodigal-single.1__X__X__00024
Identity
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-56
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7jw2A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.77 | 53.0 | 3.45e-01 | 94.2% | 17.6% |
| 2petA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 43.0 | 3.30e-01 | 73.1% | 27.8% |
| 4hstB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.64 | 43.0 | 4.06e-01 | 100.0% | 55.9% |
| 2d73A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.63 | 54.0 | 3.37e-01 | 100.0% | 17.6% |
| 7sxqA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 50.0 | 3.15e-01 | 86.5% | 33.5% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.62 | 54.0 | 3.39e-01 | 100.0% | 33.0% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 40.0 | 2.54e-01 | 94.2% | 11.3% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.61 | 47.0 | 4.24e-01 | 98.1% | 60.0% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.61 | 46.0 | 4.36e-01 | 98.1% | 68.2% |
| 4l3aA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 3.77e-01 | 98.1% | 50.0% |
| 4qa8A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.59 | 51.0 | 3.45e-01 | 100.0% | 25.7% |
| 6ovbA03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.59 | 46.0 | 3.23e-01 | 92.3% | 25.1% |
| 6pfzD02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 46.0 | 2.97e-01 | 100.0% | 17.9% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.58 | 40.0 | 3.26e-01 | 100.0% | 36.1% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.56 | 43.0 | 3.91e-01 | 98.1% | 60.3% |
| 7xoiD01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 37.0 | 2.98e-01 | 75.0% | 33.6% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.56 | 44.0 | 3.98e-01 | 92.3% | 67.5% |
| 1i5pA03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.56 | 42.0 | 2.98e-01 | 90.4% | 83.8% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 2.70e-01 | 100.0% | 13.8% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.55 | 44.0 | 3.31e-01 | 100.0% | 76.3% |
| 1ksiA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.55 | 44.0 | 2.68e-01 | 100.0% | 13.7% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 43.0 | 3.61e-01 | 94.2% | 84.8% |
| 4jphB00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.53 | 39.0 | 3.23e-01 | 84.6% | 54.1% |
| 3gw6A03 | 3.30.2460.10 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain | 0.53 | 36.0 | 3.56e-01 | 73.1% | 71.9% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 39.0 | 3.25e-01 | 100.0% | 40.7% |
| 4my2A02 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.53 | 39.0 | 3.36e-01 | 84.6% | 68.1% |
| 2hrvA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 32.0 | 2.76e-01 | 92.3% | 30.5% |
| 5utkA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.74e-01 | 98.1% | 68.9% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.52 | 44.0 | 3.62e-01 | 98.1% | 100.0% |
| 1ztcA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 37.0 | 2.49e-01 | 75.0% | 18.7% |
| 2eddA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.31e-01 | 94.2% | 59.8% |
| 4f3lA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 37.0 | 3.01e-01 | 94.2% | 35.8% |
| 1kf6B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 34.0 | 2.86e-01 | 73.1% | 35.6% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 39.0 | 2.56e-01 | 90.4% | 67.0% |
| 3w1hA01 | 3.90.1150.110 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 41.0 | 2.87e-01 | 94.2% | 31.2% |
| 4lq0A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 37.0 | 2.90e-01 | 86.5% | 53.5% |
| 1nhpA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 42.0 | 3.30e-01 | 94.2% | 45.1% |
| 1nvpD02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.51 | 34.0 | 3.64e-01 | 75.0% | 80.4% |
| 4yisB02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 38.0 | 2.97e-01 | 90.4% | 47.8% |
| 5e1qB01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 41.0 | 2.69e-01 | 100.0% | 76.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3440342 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.84 | 58.0 | 4.41e-01 | 76.9% | 33.0% |
| 3501513 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.75 | 48.0 | 3.87e-01 | 71.2% | 34.3% |
| 4261005 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.72 | 49.0 | 3.10e-01 | 75.0% | 14.0% |
| 3666591 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.72 | 51.0 | 3.31e-01 | 76.9% | 19.2% |
| 3656569 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.69 | 56.0 | 3.72e-01 | 94.2% | 22.4% |
| 3909552 | 316.1.1.37 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › FKTN_N | 0.67 | 58.0 | 3.76e-01 | 94.2% | 53.1% |
| 2320777 | 206.1.3.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP | 0.66 | 51.0 | 3.58e-01 | 86.5% | 36.7% |
| 3937354 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.65 | 55.0 | 3.58e-01 | 94.2% | 21.3% |
| 3681551 | 6129.1.1.3 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Root_cap | 0.65 | 48.0 | 3.21e-01 | 100.0% | 20.2% |
| 2163580 | 12.3.1.22 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GH97_N | 0.65 | 55.0 | 3.48e-01 | 100.0% | 18.3% |
| 5027238 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.64 | 44.0 | 3.15e-01 | 76.9% | 25.3% |
| 4487368 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.64 | 53.0 | 3.59e-01 | 94.2% | 30.0% |
| 4250181 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.62 | 51.0 | 3.45e-01 | 92.3% | 41.5% |
| 5073475 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 47.0 | 2.87e-01 | 80.8% | 53.5% |
| 3852918 | 4290.1.1.8 ↗ | alpha duplicates or obligate multimers › HP0242-like › HP0242-like › HP0242-like › Dynactin_p62 | 0.61 | 43.0 | 3.99e-01 | 75.0% | 95.7% |
| 3935947 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 48.0 | 3.40e-01 | 90.4% | 100.0% |
| 3452536 | 11.1.1.851 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26192 | 0.60 | 52.0 | 3.70e-01 | 100.0% | 69.1% |
| 3812138 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.60 | 45.0 | 3.21e-01 | 92.3% | 25.1% |
| 4037298 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.59 | 50.0 | 3.44e-01 | 100.0% | 48.0% |
| 3492664 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 40.0 | 2.53e-01 | 82.7% | 13.3% |
| 4283893 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.59 | 47.0 | 3.08e-01 | 90.4% | 49.4% |
| 3471125 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 44.0 | 4.52e-01 | 92.3% | 100.0% |
| 4984573 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.59 | 49.0 | 3.99e-01 | 100.0% | 76.4% |
| 4144983 | 205.1.1.35 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 | 0.58 | 46.0 | 3.46e-01 | 92.3% | 67.6% |
| 4518214 | 223.1.1.17 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › ScfRs | 0.56 | 40.0 | 3.35e-01 | 92.3% | 41.0% |
| 3958814 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 40.0 | 3.58e-01 | 92.3% | 51.2% |
| 3933891 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.56 | 46.0 | 3.56e-01 | 100.0% | 41.7% |
| 4941022 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.55 | 42.0 | 2.88e-01 | 92.3% | 69.3% |
| 3691059 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.54 | 44.0 | 3.14e-01 | 94.2% | 30.6% |
| 3805401 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.54 | 45.0 | 2.97e-01 | 100.0% | 23.7% |
| 3586413 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 45.0 | 3.46e-01 | 98.1% | 55.4% |
| 3791609 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.53 | 39.0 | 2.67e-01 | 80.8% | 18.7% |
| 3720662 | 883.1.1.23 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › HAM1_C, HAM1_N | 0.53 | 42.0 | 3.01e-01 | 100.0% | 49.5% |
| 2387800 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 45.0 | 3.31e-01 | 100.0% | 56.0% |
| 5039339 | 3425.2.1.0 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain | 0.53 | 43.0 | 2.89e-01 | 96.2% | 38.4% |
| 4508401 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.53 | 39.0 | 2.97e-01 | 98.1% | 33.6% |
| 5052131 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.52 | 44.0 | 3.68e-01 | 98.1% | 70.5% |
| 3562322 | 355.1.1.14 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PF30706 | 0.52 | 40.0 | 2.79e-01 | 90.4% | 59.0% |
| 4546371 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.52 | 43.0 | 3.27e-01 | 92.3% | 52.5% |
| 3926237 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.51 | 43.0 | 2.85e-01 | 100.0% | 21.3% |
| 3630197 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.51 | 37.0 | 2.46e-01 | 78.8% | 61.2% |
| 4956927 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.51 | 42.0 | 3.13e-01 | 100.0% | 85.2% |
| 3895559 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.51 | 41.0 | 2.75e-01 | 94.2% | 39.2% |
| 5084101 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 35.0 | 3.03e-01 | 73.1% | 44.4% |
| 4984762 | 1.1.1.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 | 0.50 | 41.0 | 3.20e-01 | 100.0% | 40.8% |
| 3280721 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.50 | 38.0 | 3.11e-01 | 100.0% | 74.8% |