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SRR1747052_scaffold_7_prodigal-single.1__X__X__00031

Bact-Vir

SRR1747052_scaffold_7_prodigal-single.1__X__X__00031

Identity

Kingdom:
phage

Quality

92.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 51.0 4.81e-01 75.8% 81.6%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 48.0 4.74e-01 74.2% 83.6%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 48.0 3.75e-01 74.2% 85.1%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.67 41.0 4.25e-01 74.2% 65.5%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 50.0 4.00e-01 83.9% 77.6%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 52.0 3.70e-01 91.9% 59.3%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.64 45.0 3.57e-01 75.8% 43.3%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 46.0 4.32e-01 77.4% 78.9%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.62 47.0 3.95e-01 83.9% 71.6%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.61 50.0 4.34e-01 98.4% 96.4%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 53.0 3.91e-01 100.0% 52.6%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.60e-01 79.0% 81.4%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 3.53e-01 74.2% 88.2%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.59 44.0 3.41e-01 80.6% 42.7%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 47.0 3.72e-01 93.5% 79.6%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 3.68e-01 95.2% 50.3%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 46.0 3.32e-01 93.5% 51.6%
2d8bA01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 45.0 3.52e-01 85.5% 67.1%
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 38.0 3.76e-01 74.2% 64.6%
4d0qA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 48.0 3.69e-01 100.0% 96.3%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 39.0 2.49e-01 72.6% 16.2%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 4.00e-01 96.8% 100.0%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 46.0 3.95e-01 93.5% 96.2%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 3.22e-01 82.3% 47.3%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 44.0 3.94e-01 98.4% 100.0%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 37.0 3.28e-01 71.0% 82.0%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.56e-01 82.3% 79.2%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.48e-01 87.1% 59.0%
5fcrA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 46.0 3.80e-01 100.0% 68.9%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 38.0 3.44e-01 77.4% 97.9%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 4.02e-01 98.4% 87.4%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.54 38.0 3.20e-01 77.4% 90.6%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 39.0 2.85e-01 77.4% 72.1%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 3.06e-01 83.9% 49.4%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 40.0 2.88e-01 87.1% 89.1%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.52 35.0 3.13e-01 72.6% 83.0%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.52 40.0 3.11e-01 90.3% 77.8%
1lb6A00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 41.0 3.24e-01 95.2% 98.1%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 36.0 2.79e-01 79.0% 90.4%
1zoyB01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 35.0 3.09e-01 74.2% 82.1%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.21e-01 75.8% 67.7%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.51 42.0 3.42e-01 100.0% 82.2%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.12e-01 85.5% 88.5%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 3.22e-01 93.5% 80.3%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.50 34.0 3.44e-01 72.6% 96.9%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.71e-01 100.0% 80.4%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.50 35.0 2.53e-01 79.0% 83.5%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 50.0 5.02e-01 77.4% 95.2%
4983090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 49.0 4.59e-01 77.4% 79.7%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 48.0 4.61e-01 77.4% 82.7%
3358839 1.1.7.15 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M18 0.67 55.0 4.00e-01 90.3% 90.6%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 47.0 4.74e-01 77.4% 95.3%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 47.0 4.49e-01 77.4% 84.0%
4943401 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 47.0 4.30e-01 77.4% 77.6%
3375176 1.1.7.15 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M18 0.65 55.0 4.26e-01 93.5% 96.3%
3226974 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 48.0 3.78e-01 79.0% 79.2%
3538619 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 44.0 3.53e-01 74.2% 74.6%
5013669 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 4.91e-01 98.4% 98.8%
3248246 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 44.0 3.49e-01 74.2% 64.6%
3342167 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 3.28e-01 74.2% 73.3%
3771406 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 3.55e-01 74.2% 85.6%
4607738 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.63 52.0 4.42e-01 96.8% 70.0%
3905187 5.1.3.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 0.62 43.0 2.83e-01 74.2% 95.7%
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 44.0 4.14e-01 77.4% 78.8%
4063634 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.62 51.0 4.16e-01 95.2% 64.5%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.33e-01 96.8% 70.0%
3564176 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.61 42.0 2.79e-01 74.2% 98.6%
3268767 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 41.0 3.47e-01 72.6% 74.5%
5049240 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 50.0 4.30e-01 98.4% 99.0%
3974053 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 50.0 4.41e-01 100.0% 100.0%
3180837 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.59 44.0 3.07e-01 85.5% 38.0%
5055945 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.59 41.0 3.29e-01 77.4% 94.5%
4974839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.19e-01 75.8% 99.3%
3957779 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 47.0 4.09e-01 100.0% 92.7%
3804236 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 39.0 3.10e-01 72.6% 65.7%
4004549 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 47.0 4.16e-01 98.4% 100.0%
3480564 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.14e-01 75.8% 82.9%
3894181 101.1.2.115 alpha arrays › HTH › HTH › winged helix domain › CDC27 0.56 47.0 3.52e-01 100.0% 48.6%
4963012 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 38.0 3.34e-01 74.2% 92.4%
1851176 5092.1.1.0 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins 0.55 46.0 3.70e-01 98.4% 76.5%
3621943 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 42.0 3.39e-01 85.5% 75.4%
4932428 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.55 39.0 3.85e-01 77.4% 97.1%
4583479 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.55 38.0 2.88e-01 75.8% 83.2%
3448678 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 40.0 3.24e-01 83.9% 58.6%
3282593 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.55 37.0 2.54e-01 71.0% 57.1%
3816322 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 45.0 2.89e-01 100.0% 49.6%
4961941 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 2.43e-01 79.0% 15.6%
4966168 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 35.0 2.26e-01 77.4% 12.5%
3787702 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.53 36.0 2.88e-01 74.2% 95.5%
3840670 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 36.0 2.35e-01 72.6% 77.0%
3483062 221.1.1.116 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 0.52 41.0 3.47e-01 93.5% 92.5%
4964280 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.54e-01 83.9% 70.0%
4944975 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.59e-01 100.0% 79.2%
3057477 220.1.1.146 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.52 36.0 3.34e-01 77.4% 85.7%
3213551 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.52 42.0 3.51e-01 98.4% 97.6%
4380974 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.52 40.0 3.09e-01 88.7% 99.4%
2393519 327.6.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane 0.52 37.0 2.89e-01 75.8% 67.6%
3619496 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 35.0 2.20e-01 72.6% 20.3%
1871008 11.1.1.237 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.51 38.0 3.29e-01 82.3% 82.7%
5029082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 36.0 2.71e-01 75.8% 56.5%
5032784 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 37.0 3.33e-01 82.3% 67.4%
3220022 382.1.1.27 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF7773 0.51 35.0 3.01e-01 75.8% 65.3%
4965619 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.32e-01 77.4% 100.0%
3193261 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.50 42.0 2.71e-01 100.0% 31.9%
4960838 11.14.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.50 35.0 3.20e-01 75.8% 70.0%