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SRR1747052_scaffold_7_prodigal-single.1__X__X__00066
Bact-VirSRR1747052_scaffold_7_prodigal-single.1__X__X__00066
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-14_87-133
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jmuB02 | 1.10.2040.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 2 › Protein mu-1, chain B, domain 2 | 0.60 | 47.0 | 3.74e-01 | 85.2% | 81.5% |
| 2ixdA00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.58 | 46.0 | 3.15e-01 | 88.5% | 59.5% |
| 1sg6A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.57 | 49.0 | 3.50e-01 | 100.0% | 52.3% |
| 3m9lA02 | 1.10.260.80 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.50 | 36.0 | 3.88e-01 | 88.5% | 94.1% |
D2
medium
residues 15-86
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.70 | 45.0 | 4.21e-01 | 80.6% | 52.2% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.67 | 48.0 | 3.55e-01 | 88.9% | 28.6% |
| 3u2gA02 | 2.60.98.40 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain | 0.66 | 46.0 | 3.76e-01 | 88.9% | 40.3% |
| 5jenA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.65 | 51.0 | 4.39e-01 | 83.3% | 80.2% |
| 4hd5A01 | 2.60.40.3760 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 44.0 | 3.96e-01 | 73.6% | 81.4% |
| 1yguA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.60 | 44.0 | 2.97e-01 | 79.2% | 47.1% |
| 1vjhA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 44.0 | 3.73e-01 | 84.7% | 47.5% |
| 2shpB03 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 43.0 | 2.91e-01 | 77.8% | 49.3% |
| 3ddvB01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.58 | 44.0 | 3.67e-01 | 83.3% | 91.2% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 47.0 | 4.10e-01 | 87.5% | 73.1% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.58 | 38.0 | 4.22e-01 | 80.6% | 96.1% |
| 4mb4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 41.0 | 4.04e-01 | 75.0% | 68.4% |
| 2bzlA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 44.0 | 2.97e-01 | 83.3% | 38.0% |
| 3cegA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.57 | 50.0 | 3.35e-01 | 98.6% | 41.1% |
| 3qcmA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 42.0 | 2.82e-01 | 77.8% | 45.5% |
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 42.0 | 4.02e-01 | 81.9% | 67.1% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 46.0 | 4.00e-01 | 87.5% | 90.0% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 38.0 | 3.98e-01 | 84.7% | 77.3% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 43.0 | 2.93e-01 | 83.3% | 37.8% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 43.0 | 2.91e-01 | 81.9% | 38.7% |
| 2pzhA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 41.0 | 3.49e-01 | 83.3% | 82.1% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 41.0 | 3.90e-01 | 91.7% | 67.0% |
| 2o1qA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 42.0 | 3.55e-01 | 84.7% | 81.1% |
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 42.0 | 4.11e-01 | 88.9% | 95.2% |
| 2zshA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 42.0 | 2.75e-01 | 86.1% | 40.8% |
| 5jmfA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 39.0 | 2.75e-01 | 80.6% | 74.9% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 41.0 | 3.62e-01 | 87.5% | 62.3% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 41.0 | 3.27e-01 | 88.9% | 44.6% |
| 2dm4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.46e-01 | 75.0% | 76.6% |
| 4ix3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 35.0 | 3.11e-01 | 75.0% | 46.9% |
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.50 | 42.0 | 3.45e-01 | 100.0% | 55.6% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3800832 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.71 | 47.0 | 4.84e-01 | 80.6% | 71.4% |
| 3927926 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.66 | 44.0 | 4.64e-01 | 80.6% | 76.9% |
| 3579536 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.65 | 44.0 | 4.88e-01 | 80.6% | 90.9% |
| 5003437 | 5090.1.1.6 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer | 0.65 | 41.0 | 3.23e-01 | 87.5% | 29.7% |
| 3390210 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.64 | 48.0 | 4.18e-01 | 80.6% | 93.6% |
| 3995693 | 59.1.3.0 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains | 0.63 | 46.0 | 4.34e-01 | 79.2% | 87.8% |
| 4416756 | 11.46.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C-domain of Mg adhesin P110 › C-domain of Mg adhesin P110 | 0.62 | 48.0 | 4.15e-01 | 86.1% | 72.5% |
| 3904005 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.61 | 46.0 | 3.07e-01 | 81.9% | 38.5% |
| 3739414 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.60 | 43.0 | 3.87e-01 | 77.8% | 60.0% |
| 3532417 | 2007.2.3.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK | 0.60 | 44.0 | 2.89e-01 | 77.8% | 45.8% |
| 3788335 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.59 | 44.0 | 2.85e-01 | 84.7% | 23.9% |
| None | — | 0.58 | 45.0 | 2.94e-01 | 83.3% | 34.1% | |
| 3481161 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.58 | 44.0 | 2.95e-01 | 81.9% | 40.7% |
| 3496357 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.58 | 44.0 | 2.98e-01 | 83.3% | 38.2% |
| 3761536 | 11.1.1.1209 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM131L_2nd, Ig_TMEM131L_3 | 0.58 | 46.0 | 3.15e-01 | 88.9% | 34.4% |
| 3509161 | 2007.2.3.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK | 0.58 | 42.0 | 2.81e-01 | 77.8% | 44.9% |
| 4574497 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.57 | 44.0 | 3.72e-01 | 81.9% | 64.2% |
| 5061559 | 5.1.4.235 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st | 0.57 | 46.0 | 2.98e-01 | 88.9% | 25.1% |
| 4087006 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 42.0 | 3.36e-01 | 80.6% | 58.7% |
| 3339950 | 7579.1.1.101 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, Abhydrolase_3, BD-FAE | 0.56 | 45.0 | 2.92e-01 | 87.5% | 37.9% |
| 3961733 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.56 | 40.0 | 3.80e-01 | 80.6% | 61.1% |
| 4487396 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 47.0 | 2.97e-01 | 98.6% | 35.8% |
| 3343489 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.55 | 43.0 | 2.87e-01 | 86.1% | 42.4% |
| 4946688 | 12.6.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127C | 0.55 | 43.0 | 3.61e-01 | 81.9% | 87.0% |
| 3457868 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.55 | 44.0 | 2.79e-01 | 86.1% | 37.5% |
| 5032936 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.55 | 42.0 | 3.34e-01 | 83.3% | 71.8% |
| 4678303 | 5.1.4.325 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30552 | 0.55 | 46.0 | 2.89e-01 | 91.7% | 20.5% |
| None | — | 0.55 | 43.0 | 2.83e-01 | 86.1% | 41.0% | |
| 3421524 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 49.0 | 3.03e-01 | 98.6% | 69.2% |
| 3284488 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.54 | 42.0 | 3.42e-01 | 88.9% | 42.8% |
| 3341502 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.54 | 43.0 | 3.23e-01 | 87.5% | 73.3% |
| 3606556 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 46.0 | 2.69e-01 | 100.0% | 52.3% |
| 3249059 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.53 | 45.0 | 3.09e-01 | 97.2% | 63.6% |
| 4048802 | 5.1.4.369 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N | 0.53 | 44.0 | 2.53e-01 | 97.2% | 18.9% |
| 3290396 | 5.1.2.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N | 0.53 | 43.0 | 2.94e-01 | 91.7% | 36.6% |
| 3996387 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.53 | 42.0 | 3.11e-01 | 87.5% | 47.0% |
| 4401149 | 11.1.4.43 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › X25_BaPul_like | 0.53 | 40.0 | 3.69e-01 | 81.9% | 92.6% |
| 4957585 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.53 | 46.0 | 3.00e-01 | 98.6% | 37.3% |
| 3730584 | 2004.1.1.78 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rap_GAP | 0.53 | 42.0 | 3.02e-01 | 87.5% | 76.7% |
| 3636153 | 2004.1.1.78 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rap_GAP | 0.52 | 40.0 | 3.00e-01 | 86.1% | 90.7% |
| 3873956 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 45.0 | 3.89e-01 | 100.0% | 65.8% |
| 3900377 | 220.1.1.41 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sharpin_PH | 0.52 | 41.0 | 3.56e-01 | 90.3% | 69.6% |
| 3199415 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.52 | 43.0 | 3.08e-01 | 94.4% | 90.3% |
| 3581438 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.52 | 46.0 | 2.93e-01 | 100.0% | 39.2% |
| 3440597 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 42.0 | 3.94e-01 | 91.7% | 97.8% |
| 3871207 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.51 | 43.0 | 2.73e-01 | 100.0% | 46.2% |
| 3990093 | 10.32.1.81 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BgaA-like_CBM | 0.50 | 34.0 | 2.64e-01 | 70.8% | 92.4% |