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SRR1747052_scaffold_7_prodigal-single.1__X__X__00074
Bact-VirSRR1747052_scaffold_7_prodigal-single.1__X__X__00074
Identity
- Kingdom:
- phage
Quality
73.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 72-127
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3urzA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.77 | 59.0 | 3.94e-01 | 82.1% | 22.8% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.73 | 56.0 | 5.58e-01 | 83.9% | 98.2% |
| 4u04B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.69 | 53.0 | 4.59e-01 | 82.1% | 53.4% |
| 3nf4A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.68 | 61.0 | 4.75e-01 | 100.0% | 80.7% |
| 3qavA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 52.0 | 3.85e-01 | 82.1% | 83.6% |
| 1rx0C01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.68 | 59.0 | 4.62e-01 | 100.0% | 74.8% |
| 1r2jA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.67 | 57.0 | 4.71e-01 | 96.4% | 94.2% |
| 3lysA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.67 | 53.0 | 4.37e-01 | 91.1% | 47.6% |
| 1ivhA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.67 | 58.0 | 4.58e-01 | 100.0% | 77.9% |
| 3e4bA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 54.0 | 3.29e-01 | 98.2% | 14.9% |
| 3gs3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.63 | 47.0 | 3.14e-01 | 83.9% | 20.5% |
| 8cdaC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.63 | 55.0 | 4.36e-01 | 100.0% | 82.9% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.63 | 43.0 | 4.47e-01 | 71.4% | 86.0% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.63 | 50.0 | 3.81e-01 | 92.9% | 64.9% |
| 4aefA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 50.0 | 3.07e-01 | 91.1% | 35.4% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.61 | 48.0 | 3.96e-01 | 92.9% | 63.5% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 47.0 | 3.60e-01 | 87.5% | 90.3% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.60 | 46.0 | 3.68e-01 | 91.1% | 75.0% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.59 | 41.0 | 3.72e-01 | 73.2% | 55.7% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 47.0 | 3.99e-01 | 92.9% | 87.5% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.59 | 49.0 | 3.90e-01 | 94.6% | 82.9% |
| 4g10A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 47.0 | 3.66e-01 | 94.6% | 86.8% |
| 1bxiA00 | 1.10.1200.20 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Colicin E immunity protein | 0.57 | 48.0 | 4.25e-01 | 94.6% | 73.5% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 46.0 | 3.91e-01 | 92.9% | 81.4% |
| 2wp8J01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.57 | 48.0 | 3.41e-01 | 96.4% | 30.4% |
| 5f42A02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.56 | 45.0 | 4.12e-01 | 98.2% | 68.3% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 40.0 | 3.40e-01 | 85.7% | 73.5% |
| 3k1dA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 44.0 | 2.71e-01 | 98.2% | 24.5% |
| 3eu8A00 | 1.50.10.140 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Glycoside hydrolase 144 (GH144) | 0.51 | 41.0 | 2.55e-01 | 100.0% | 24.4% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.50 | 36.0 | 3.57e-01 | 76.8% | 76.3% |
| 1xzzA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 40.0 | 2.72e-01 | 89.3% | 41.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3425614 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 61.0 | 5.17e-01 | 100.0% | 54.7% |
| 3782403 | 109.4.1.888 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_N | 0.68 | 53.0 | 3.60e-01 | 87.5% | 27.1% |
| 3357309 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.68 | 59.0 | 3.65e-01 | 96.4% | 16.9% |
| 5058842 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.68 | 51.0 | 4.42e-01 | 82.1% | 85.6% |
| 4029309 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.67 | 46.0 | 4.97e-01 | 78.6% | 88.9% |
| 3170792 | 109.4.1.83 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf | 0.66 | 55.0 | 3.30e-01 | 94.6% | 14.4% |
| 3585913 | 109.4.1.1578 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30504 | 0.66 | 55.0 | 3.28e-01 | 98.2% | 26.4% |
| 3723532 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.65 | 52.0 | 3.17e-01 | 91.1% | 52.4% |
| 4987361 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.64 | 53.0 | 4.22e-01 | 94.6% | 86.7% |
| 3372126 | 109.4.1.1356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, PPR_3, PPR_long | 0.64 | 53.0 | 3.67e-01 | 98.2% | 54.0% |
| 3268251 | 226.1.1.4 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 | 0.64 | 53.0 | 4.03e-01 | 92.9% | 45.1% |
| 4586135 | 4033.1.1.5 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_ox_N | 0.62 | 52.0 | 4.01e-01 | 100.0% | 66.4% |
| 5048041 | 610.2.1.0 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 | 0.61 | 49.0 | 4.20e-01 | 92.9% | 94.7% |
| 3689148 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.59 | 48.0 | 3.18e-01 | 92.9% | 51.2% |
| 3396277 | 192.17.1.12 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › WHEP-TRS | 0.59 | 48.0 | 4.72e-01 | 91.1% | 93.3% |
| 3454879 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 42.0 | 3.50e-01 | 82.1% | 52.2% |
| 3501307 | 627.1.1.1 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 | 0.57 | 45.0 | 3.39e-01 | 94.6% | 41.8% |
| 3597239 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 45.0 | 2.83e-01 | 98.2% | 28.9% |
| 3473135 | 601.16.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › Focal_AT | 0.55 | 44.0 | 3.64e-01 | 98.2% | 89.2% |
| 5012084 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.55 | 43.0 | 2.90e-01 | 85.7% | 86.7% |