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SRR1747052_scaffold_7_prodigal-single.1__X__X__00099

Bact-Vir

SRR1747052_scaffold_7_prodigal-single.1__X__X__00099

Identity

Kingdom:
phage

Quality

71.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-125
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.66 44.0 5.10e-01 78.6% 98.6%
1j5wB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 49.0 3.99e-01 86.4% 88.1%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.61 38.0 4.13e-01 72.8% 75.3%
1a7gE00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 40.0 4.35e-01 72.8% 82.9%
3hx9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 4.46e-01 76.7% 78.6%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 4.31e-01 74.8% 75.3%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.29e-01 73.8% 77.7%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.30e-01 73.8% 76.2%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 4.10e-01 73.8% 73.2%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 46.0 4.74e-01 85.4% 89.5%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 41.0 4.20e-01 73.8% 75.5%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 4.01e-01 71.8% 79.4%
4uxuA00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.58 47.0 3.76e-01 88.3% 79.5%
4oc8A01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.58 50.0 4.03e-01 99.0% 82.8%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 4.15e-01 74.8% 79.6%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.58 46.0 4.64e-01 87.4% 94.2%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 4.06e-01 73.8% 74.8%
3vaxA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 45.0 4.66e-01 84.5% 97.9%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 37.0 4.06e-01 70.9% 83.5%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 4.21e-01 71.8% 85.4%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.57 41.0 3.95e-01 73.8% 74.8%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.57 43.0 3.60e-01 82.5% 48.9%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.83e-01 75.7% 72.5%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.56 45.0 4.51e-01 87.4% 91.5%
3bdeB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 4.03e-01 72.8% 78.8%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.56 40.0 3.66e-01 73.8% 75.2%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 4.10e-01 73.8% 79.2%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.83e-01 71.8% 80.2%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 37.0 3.95e-01 70.9% 80.0%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.91e-01 70.9% 89.1%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 41.0 4.25e-01 84.5% 90.2%
4ht4A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.54 40.0 3.35e-01 80.6% 83.5%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.73e-01 70.9% 82.7%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.04e-01 79.6% 98.0%
4binA01 2.60.40.3500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 4.04e-01 84.5% 82.8%
2fgeA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 47.0 3.57e-01 100.0% 73.6%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 38.0 4.01e-01 75.7% 96.8%
2bg9C01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.52 40.0 3.27e-01 84.5% 79.4%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 41.0 4.33e-01 96.1% 98.9%
1ry9A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 43.0 3.99e-01 93.2% 85.7%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.45e-01 71.8% 73.7%
3udcA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 3.67e-01 91.3% 79.5%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 3.43e-01 85.4% 87.1%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 3.24e-01 82.5% 82.2%
3l4gC01 3.30.1370.240 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 42.0 4.21e-01 90.3% 98.1%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 36.0 3.59e-01 74.8% 76.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3236416 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.67 48.0 3.32e-01 74.8% 85.3%
5077304 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.66 45.0 5.05e-01 80.6% 97.3%
4971395 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 47.0 4.89e-01 87.4% 82.1%
3603235 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.65 46.0 4.72e-01 85.4% 77.0%
4205746 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.63 46.0 4.65e-01 87.4% 77.1%
3728542 306.5.1.0 a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP 0.63 44.0 4.34e-01 78.6% 67.9%
4047925 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.63 44.0 4.31e-01 73.8% 73.9%
5022277 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 47.0 4.39e-01 83.5% 64.6%
4538250 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.62 48.0 4.40e-01 87.4% 63.7%
4993856 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 45.0 4.56e-01 84.5% 79.0%
4954449 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.61 48.0 4.89e-01 85.4% 94.9%
3997193 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.60 52.0 3.56e-01 95.1% 94.0%
4373827 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.60 38.0 4.11e-01 71.8% 76.1%
3587109 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.60 38.0 4.08e-01 71.8% 74.4%
3589403 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.59 45.0 4.37e-01 82.5% 97.5%
3173026 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.58 47.0 4.00e-01 88.3% 62.9%
4971398 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 45.0 4.49e-01 86.4% 80.0%
4930552 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.58 35.0 3.90e-01 73.8% 77.5%
4945381 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.57 39.0 4.22e-01 72.8% 84.7%
4941817 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 38.0 3.79e-01 72.8% 64.2%
3546340 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 41.0 3.92e-01 75.7% 67.7%
5015958 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.57 39.0 3.99e-01 71.8% 80.8%
3991064 319.1.1.11 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SGS 0.57 40.0 3.64e-01 72.8% 63.3%
3473979 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.57 45.0 3.70e-01 86.4% 51.3%
3747707 304.53.1.0 a+b two layers › Alpha-beta plaits › DOPA dioxygenase-like › DOPA dioxygenase-like 0.56 40.0 3.46e-01 74.8% 50.6%
5030500 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 46.0 4.19e-01 90.3% 85.7%
3227174 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 35.0 3.77e-01 92.2% 72.2%
4968810 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.56 43.0 4.55e-01 83.5% 96.7%
4410723 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.56 42.0 4.22e-01 82.5% 79.0%
5005033 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.56 34.0 3.74e-01 92.2% 76.2%
4997715 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 38.0 3.31e-01 70.9% 64.1%
4944520 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 40.0 3.12e-01 76.7% 69.1%
3283943 304.8.1.80 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF6196 0.55 35.0 4.10e-01 71.8% 95.7%
4665957 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.55 43.0 4.37e-01 87.4% 87.6%
3233779 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.55 42.0 3.52e-01 84.5% 50.3%
3175120 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.55 43.0 4.28e-01 86.4% 85.5%
4541115 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.55 43.0 4.13e-01 87.4% 78.4%
4972556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 4.23e-01 80.6% 89.4%
4946218 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 37.0 3.74e-01 70.9% 70.5%
4618987 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 45.0 4.25e-01 90.3% 82.4%
4980688 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.54 42.0 4.41e-01 82.5% 95.6%
4121613 848.1.1.1 a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.54 38.0 2.94e-01 73.8% 75.5%
4975579 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 45.0 3.99e-01 93.2% 67.1%
3699052 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 48.0 3.43e-01 100.0% 69.0%
4942718 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.54 37.0 3.78e-01 70.9% 74.0%
3601759 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 38.0 2.72e-01 84.5% 23.8%
3163632 3313.1.1.1 a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 0.54 38.0 4.21e-01 77.7% 97.5%
4976343 810.1.1.2 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.53 39.0 3.85e-01 79.6% 94.7%
4233442 304.4.1.54 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.52 40.0 3.85e-01 92.2% 70.0%
3471357 304.133.1.0 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein 0.52 36.0 3.51e-01 72.8% 72.5%
4117256 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.52 41.0 3.80e-01 84.5% 68.5%
3663444 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 39.0 3.74e-01 100.0% 68.0%
3307617 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.51 35.0 3.49e-01 70.9% 75.5%
5050916 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.50 38.0 3.39e-01 81.6% 88.0%