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SRR1747052_scaffold_7_prodigal-single.1__X__X__00143

Bact-Vir

SRR1747052_scaffold_7_prodigal-single.1__X__X__00143

Identity

Kingdom:
phage

Quality

82.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-82
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.68 52.0 4.50e-01 81.5% 57.6%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.68 51.0 4.39e-01 80.2% 81.1%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 58.0 3.60e-01 96.3% 33.6%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.66 41.0 3.64e-01 97.5% 44.7%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 49.0 4.22e-01 80.2% 77.7%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.65 37.0 3.98e-01 85.2% 66.2%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 42.0 4.37e-01 97.5% 76.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 47.0 3.82e-01 85.2% 68.7%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 50.0 4.47e-01 90.1% 66.4%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 42.0 4.54e-01 84.0% 89.4%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 3.74e-01 72.8% 81.1%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 46.0 3.28e-01 84.0% 85.4%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 3.83e-01 82.7% 52.4%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 40.0 3.44e-01 71.6% 82.4%
1n7vA02 2.60.330.10 Mainly Beta › Sandwich › receptor-binding protein prd1-p2, domain 2 › receptor-binding protein prd1-p2, domain 2 0.58 49.0 4.32e-01 95.1% 96.7%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.77e-01 77.8% 84.3%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 41.0 3.50e-01 77.8% 50.0%
2lrsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 4.35e-01 79.0% 88.7%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.27e-01 96.3% 37.6%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.56 50.0 3.04e-01 98.8% 40.2%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 43.0 3.77e-01 85.2% 64.1%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 47.0 3.94e-01 93.8% 66.9%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 4.06e-01 88.9% 72.5%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 45.0 3.56e-01 87.7% 65.9%
1ukxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 41.0 3.51e-01 82.7% 77.4%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 47.0 3.29e-01 97.5% 90.8%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 47.0 3.30e-01 100.0% 37.3%
3csqA02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.53 43.0 3.45e-01 90.1% 57.9%
1jzdC00 2.60.40.1250 Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain 0.53 37.0 3.29e-01 74.1% 75.4%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.65e-01 76.5% 77.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 4.00e-01 80.2% 89.2%
7sulB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.96e-01 96.3% 24.8%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 45.0 3.01e-01 100.0% 41.7%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 3.55e-01 91.4% 70.7%
2qubA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.99e-01 97.5% 51.7%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 34.0 2.61e-01 70.4% 36.2%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.51 44.0 3.21e-01 92.6% 54.3%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.41e-01 87.7% 72.5%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 3.59e-01 91.4% 71.4%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3314097 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 46.0 4.71e-01 76.5% 72.5%
3619317 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 57.0 4.66e-01 92.6% 71.7%
3791028 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 56.0 4.86e-01 93.8% 95.2%
3696318 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.66 58.0 3.68e-01 96.3% 41.0%
3923261 2484.1.1.230 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.65 45.0 3.95e-01 71.6% 54.2%
5074262 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.65 44.0 3.39e-01 76.5% 31.7%
4127407 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.65 44.0 3.39e-01 76.5% 31.7%
4951151 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.65 57.0 3.70e-01 96.3% 34.6%
3632913 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.65 57.0 3.51e-01 96.3% 37.4%
3477231 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 48.0 3.57e-01 79.0% 76.6%
3735671 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 49.0 4.57e-01 81.5% 75.0%
3282536 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 50.0 5.03e-01 82.7% 93.8%
3059717 5.1.3.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_4 0.64 56.0 3.52e-01 96.3% 24.8%
4106038 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 42.0 3.16e-01 95.1% 28.7%
None 0.64 56.0 3.52e-01 96.3% 44.0%
4459942 223.3.1.3 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.64 49.0 3.26e-01 84.0% 79.1%
4962558 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.64 46.0 3.45e-01 76.5% 36.9%
3481228 642.1.1.0 a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain 0.64 56.0 4.27e-01 98.8% 78.4%
3960716 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 49.0 4.40e-01 84.0% 94.8%
4813080 5.1.3.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_4 0.63 54.0 3.77e-01 93.8% 39.5%
4220848 2484.1.1.103 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.62 47.0 3.41e-01 81.5% 46.4%
4508852 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 48.0 4.32e-01 84.0% 85.2%
5010547 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.62 41.0 4.38e-01 91.4% 78.6%
3692272 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.62 53.0 4.38e-01 96.3% 88.7%
3254117 11.1.1.67 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.62 46.0 4.06e-01 79.0% 85.0%
3435356 2484.1.1.103 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.62 47.0 3.19e-01 81.5% 36.3%
3602062 210.2.1.0 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.62 46.0 3.75e-01 79.0% 58.0%
3268888 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.62 51.0 4.94e-01 91.4% 85.6%
3658408 4325.1.1.13 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.61 42.0 4.35e-01 70.4% 89.3%
3750534 2.1.1.257 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30832 0.61 50.0 4.30e-01 92.6% 68.1%
4204001 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.61 44.0 3.59e-01 76.5% 56.7%
3351393 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 45.0 4.27e-01 81.5% 95.8%
3608487 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 4.53e-01 91.4% 82.9%
3981600 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.59 42.0 4.04e-01 87.7% 66.7%
4629131 9.29.1.1 beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK 0.58 42.0 3.64e-01 87.7% 50.4%
4873579 4019.1.1.3 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.57 43.0 4.37e-01 79.0% 84.6%
3495316 2007.2.3.24 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PF27561 0.57 45.0 2.94e-01 87.7% 85.8%
3993280 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 42.0 3.63e-01 77.8% 62.4%
3958869 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 47.0 3.49e-01 93.8% 72.2%
3705600 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 42.0 3.60e-01 79.0% 61.5%
3965662 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.56 41.0 3.45e-01 77.8% 58.6%
3603591 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.17e-01 96.3% 28.6%
3853362 243.3.1.2 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cathelicidins 0.56 40.0 3.63e-01 76.5% 72.2%
3464474 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 41.0 3.41e-01 80.2% 89.7%
3825504 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.56 41.0 3.99e-01 79.0% 74.4%
3917522 223.1.1.29 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.55 39.0 3.37e-01 72.8% 57.6%
2546240 5.1.3.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase 0.55 46.0 3.50e-01 96.3% 54.7%
5071482 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.55 40.0 3.51e-01 77.8% 64.0%
3220105 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 49.0 3.27e-01 100.0% 30.8%
4031371 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.55 40.0 3.33e-01 76.5% 57.1%
4551342 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 39.0 3.92e-01 76.5% 84.7%
4987581 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.54 44.0 3.37e-01 88.9% 40.0%
4951310 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 2.98e-01 96.3% 36.5%
3962269 2004.1.1.204 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 46.0 2.97e-01 100.0% 36.7%
3682129 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.54 46.0 3.04e-01 97.5% 26.9%
4938869 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.53 44.0 3.22e-01 88.9% 36.2%
3867704 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 47.0 3.18e-01 100.0% 31.3%
3914493 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 47.0 2.81e-01 100.0% 16.2%
3399741 5.1.4.377 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_TULP_N 0.52 46.0 3.04e-01 97.5% 41.8%
3433312 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 38.0 3.36e-01 79.0% 63.2%
3819047 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 42.0 3.56e-01 90.1% 73.6%
3970856 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 39.0 2.56e-01 84.0% 44.1%
4959341 2008.1.1.152 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 0.52 47.0 4.02e-01 98.8% 78.4%
3326221 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 3.99e-01 91.4% 93.7%
3590584 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 37.0 3.18e-01 77.8% 83.0%
3246974 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 38.0 3.56e-01 80.2% 66.0%
4136946 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 38.0 3.17e-01 82.7% 87.7%
3706274 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.50 45.0 3.43e-01 100.0% 53.2%
3758281 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.50 40.0 3.24e-01 92.6% 42.8%