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SRR1747052_scaffold_7_prodigal-single.1__X__X__00173

Bact-Vir

SRR1747052_scaffold_7_prodigal-single.1__X__X__00173

Identity

Kingdom:
phage

Quality

84.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-21_38-77
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e4uA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 47.0 3.47e-01 77.0% 33.5%
3c3kA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 46.0 3.63e-01 75.4% 42.8%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.65 56.0 3.79e-01 100.0% 58.9%
1qfxA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.65 49.0 3.30e-01 85.2% 26.0%
4evqA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 47.0 3.53e-01 80.3% 37.3%
1hyeA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 50.0 3.76e-01 85.2% 40.1%
2waaA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.63 54.0 3.79e-01 100.0% 54.2%
4y9tA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 49.0 3.61e-01 88.5% 39.8%
3ixqA01 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 48.0 3.72e-01 88.5% 69.4%
3f3kA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.61 52.0 3.49e-01 100.0% 29.6%
1usgA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 45.0 3.53e-01 82.0% 40.3%
1a3cA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 49.0 3.64e-01 91.8% 53.0%
2xvyA02 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 45.0 3.67e-01 83.6% 51.6%
8b0qA01 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.60 52.0 3.77e-01 100.0% 54.0%
4pyrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 42.0 3.44e-01 77.0% 47.5%
4uulA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 46.0 3.44e-01 85.2% 39.5%
3h5lA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 51.0 3.70e-01 96.7% 61.8%
2vl7A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.44e-01 93.4% 69.1%
1afwB01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 49.0 3.45e-01 100.0% 36.2%
5e5bA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.57 42.0 3.17e-01 82.0% 66.1%
4gmkA01 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 44.0 3.47e-01 88.5% 69.9%
3svtA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 3.01e-01 91.8% 59.1%
8azbA01 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.56 46.0 3.19e-01 93.4% 59.6%
3cssA00 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 42.0 2.88e-01 86.9% 61.0%
2dm9A00 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.56 47.0 3.92e-01 100.0% 60.2%
1zbsA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 45.0 3.99e-01 95.1% 92.7%
3a11B02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.56 41.0 2.98e-01 83.6% 52.8%
5oesA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.55 38.0 3.11e-01 73.8% 76.6%
4ombA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 40.0 3.09e-01 80.3% 35.7%
1ufoA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 3.20e-01 100.0% 86.5%
4jc8A01 3.40.50.2060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 0.54 44.0 3.46e-01 91.8% 74.3%
1m0wA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.54 37.0 3.03e-01 73.8% 77.5%
5tt0B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 43.0 3.00e-01 96.7% 36.7%
3e53A00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 41.0 2.50e-01 85.2% 14.4%
4gr4C02 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 41.0 2.58e-01 83.6% 45.1%
3i4fC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 45.0 3.13e-01 100.0% 74.6%
2xheA01 3.40.50.2060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 0.54 44.0 3.48e-01 91.8% 57.0%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 2.67e-01 95.1% 34.8%
3zs6A03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.53 43.0 3.03e-01 93.4% 58.5%
5kztA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.53 44.0 3.12e-01 100.0% 62.6%
3euaF01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 35.0 2.75e-01 72.1% 51.9%
3iteB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 39.0 2.44e-01 83.6% 48.2%
7l6lC01 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 2.98e-01 91.8% 31.0%
4gl8A03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.51 42.0 3.03e-01 100.0% 57.8%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 39.0 2.92e-01 90.2% 99.5%
3pukA01 3.40.50.2060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 0.51 41.0 3.28e-01 91.8% 57.4%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3605597 2007.1.2.27 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase 0.69 49.0 3.75e-01 75.4% 40.0%
3343676 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.69 50.0 4.20e-01 78.7% 56.2%
3938581 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.68 48.0 3.48e-01 75.4% 30.9%
3270633 2484.3.1.3 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › FACT-Spt16_Nlob 0.68 51.0 3.70e-01 82.0% 65.7%
5036299 2003.1.7.10 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Rib_5-P_isom_A 0.68 54.0 4.02e-01 88.5% 67.1%
3742109 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.67 49.0 3.23e-01 77.0% 42.8%
3915216 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.67 57.0 3.95e-01 95.1% 45.9%
5058081 7573.1.1.0 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.66 48.0 3.84e-01 78.7% 54.4%
5028922 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.66 48.0 3.87e-01 78.7% 46.7%
3455892 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.65 56.0 3.83e-01 95.1% 40.5%
4955938 2007.1.2.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp 0.65 46.0 3.58e-01 75.4% 40.7%
3473079 2007.1.4.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain 0.65 53.0 4.64e-01 91.8% 82.1%
3594565 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.65 57.0 3.52e-01 100.0% 43.7%
10475 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.64 52.0 3.16e-01 93.4% 34.7%
3602784 2007.1.16.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn 0.64 51.0 4.27e-01 88.5% 59.0%
4040654 7563.1.1.4 a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related › YpsA 0.64 51.0 3.68e-01 91.8% 38.9%
3443580 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.63 52.0 3.72e-01 95.1% 44.1%
4403649 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.63 48.0 3.10e-01 85.2% 21.0%
3639642 2004.1.1.186 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.63 52.0 3.51e-01 93.4% 42.9%
175418 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.62 52.0 3.50e-01 100.0% 29.7%
3972834 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.61 49.0 3.41e-01 93.4% 57.9%
3514944 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.61 53.0 3.71e-01 100.0% 44.4%
3729346 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.61 47.0 3.06e-01 85.2% 43.2%
3208633 2004.1.1.768 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_12, AAA_19 0.60 53.0 2.96e-01 100.0% 60.0%
3898913 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.60 49.0 3.53e-01 93.4% 45.3%
4303160 2004.1.1.226 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.60 43.0 2.79e-01 77.0% 56.9%
3697444 2004.1.1.186 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.60 49.0 3.32e-01 93.4% 41.6%
4884659 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.59 50.0 3.52e-01 100.0% 57.1%
5029075 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.59 43.0 3.96e-01 80.3% 75.3%
3639139 2003.1.7.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.59 43.0 3.06e-01 82.0% 53.8%
3988046 2003.1.7.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › DeoRC 0.59 46.0 3.36e-01 88.5% 65.2%
3785149 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.38e-01 86.9% 34.4%
4961849 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 41.0 2.83e-01 75.4% 71.2%
3280225 2004.1.1.196 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.59 47.0 3.67e-01 91.8% 57.2%
3172133 7514.1.1.3 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 0.59 51.0 3.77e-01 100.0% 72.1%
3982265 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.58 49.0 4.36e-01 100.0% 66.3%
3602039 7525.1.1.0 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like 0.57 48.0 3.43e-01 100.0% 62.7%
4282818 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.57 46.0 3.84e-01 100.0% 53.1%
4535809 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.57 43.0 3.27e-01 86.9% 36.5%
3964520 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.57 43.0 3.27e-01 82.0% 59.3%
4983788 2007.1.5.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.56 48.0 3.85e-01 100.0% 76.9%
4410019 2004.1.1.492 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, ADDB_N, PF27467 0.56 44.0 2.50e-01 86.9% 28.2%
3218897 7585.1.1.1 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.56 43.0 3.39e-01 86.9% 53.6%
3236453 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.56 42.0 2.69e-01 86.9% 28.4%
3586844 2003.1.1.26 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Glyco_hydro_4 0.55 45.0 3.28e-01 93.4% 41.6%
4014690 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.55 44.0 3.01e-01 93.4% 27.7%
3633477 2007.1.16.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn 0.54 45.0 3.58e-01 95.1% 51.5%
10793 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 46.0 3.20e-01 100.0% 86.1%
1681150 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 40.0 3.13e-01 80.3% 54.0%
5036585 7515.1.1.8 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Metalloenzyme 0.54 45.0 3.18e-01 100.0% 45.9%
3957365 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 40.0 3.11e-01 82.0% 40.0%
3966399 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 42.0 3.27e-01 88.5% 42.1%
3953364 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 44.0 3.20e-01 96.7% 47.9%
3972251 7574.1.1.0 a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) 0.53 40.0 2.77e-01 83.6% 91.3%
4009558 7523.1.1.3 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.53 46.0 3.22e-01 100.0% 56.2%
4010864 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 40.0 2.99e-01 82.0% 50.6%
1871190 7523.1.1.3 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.53 44.0 3.13e-01 100.0% 63.0%
5045615 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.52 40.0 2.91e-01 85.2% 34.6%
4990136 7584.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.52 43.0 3.16e-01 96.7% 36.2%
3942612 2003.1.7.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › DeoRC 0.52 43.0 3.14e-01 98.4% 45.9%
3978402 7581.1.1.0 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.52 44.0 2.98e-01 100.0% 28.1%
4230139 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 41.0 3.12e-01 90.2% 38.7%
3924160 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.52 39.0 3.54e-01 85.2% 67.8%
3740223 7585.1.1.1 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.51 41.0 3.30e-01 91.8% 76.9%
3210576 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 40.0 3.11e-01 88.5% 56.0%
3972928 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 40.0 3.16e-01 86.9% 42.9%
3826858 207.1.1.99 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 0.51 42.0 2.64e-01 100.0% 41.7%
3944366 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 39.0 3.20e-01 91.8% 45.2%
4242967 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 39.0 3.04e-01 86.9% 56.0%
D2 medium residues 22-37_78-167
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f2xA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.70 53.0 4.73e-01 81.1% 87.4%
2a1iA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 50.0 4.88e-01 83.0% 90.6%
3h5iA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 54.0 5.13e-01 92.5% 91.2%
4uw9A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 52.0 4.71e-01 91.5% 91.0%
5i45A00 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 55.0 4.49e-01 99.1% 76.9%
4wfqA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.61 51.0 4.16e-01 89.6% 88.0%
3fmgA01 3.40.50.11130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoprotein VP7, domain 1 0.61 52.0 4.68e-01 94.3% 90.5%
2gl5A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.60 43.0 3.22e-01 74.5% 81.7%
4xltA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 48.0 4.52e-01 87.7% 90.6%
1d4oA00 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.59 45.0 3.87e-01 82.1% 80.8%
3ky8A01 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.59 40.0 3.42e-01 70.8% 62.1%
1atzB00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.58 49.0 4.06e-01 91.5% 89.4%
1q14A01 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.58 44.0 3.71e-01 82.1% 68.8%
7wbtA02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.57 42.0 2.83e-01 78.3% 47.0%
3gg7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.56 47.0 3.66e-01 92.5% 97.5%
7cunF01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.56 47.0 3.64e-01 92.5% 86.5%
2wc1A00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 43.0 3.63e-01 82.1% 87.9%
3rhzA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 49.0 4.35e-01 98.1% 79.6%
2ihtA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.56 43.0 3.81e-01 84.9% 77.4%
4k3zA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 42.0 3.12e-01 83.0% 96.1%
7fc0E01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 40.0 3.07e-01 76.4% 82.2%
4cu2A00 3.40.50.12090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 36.0 4.01e-01 84.9% 87.5%
3g68B01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 43.0 3.48e-01 84.9% 58.3%
2qs8A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 38.0 2.83e-01 74.5% 100.0%
4py9A01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.51 39.0 3.18e-01 82.1% 58.4%
2omkA00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.51 35.0 2.83e-01 71.7% 39.2%
5y5nA01 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.51 39.0 3.26e-01 83.0% 62.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703727 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.73 61.0 4.56e-01 88.7% 62.9%
3936406 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.72 61.0 4.87e-01 90.6% 92.2%
4970856 7512.1.1.107 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF354 0.67 61.0 5.06e-01 100.0% 71.9%
4958279 7512.1.1.107 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF354 0.66 60.0 4.98e-01 100.0% 68.6%
4958287 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.66 59.0 4.77e-01 100.0% 61.5%
4967044 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 54.0 4.06e-01 88.7% 75.7%
4979073 7512.1.1.107 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF354 0.65 58.0 4.94e-01 100.0% 79.4%
4647639 2003.1.1.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N 0.64 46.0 4.22e-01 75.5% 90.7%
5053837 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.63 56.0 5.03e-01 100.0% 80.0%
5039945 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.62 55.0 4.57e-01 100.0% 88.2%
5049500 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 49.0 4.36e-01 84.0% 96.7%
4974800 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.61 55.0 4.55e-01 98.1% 71.4%
3996025 7512.1.1.17 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_90 0.61 50.0 4.35e-01 87.7% 65.0%
4973370 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.61 54.0 4.67e-01 99.1% 79.4%
3635323 2006.1.6.40 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF7788 0.60 49.0 3.99e-01 88.7% 99.0%
4959783 7512.1.1.61 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_2 0.60 53.0 4.37e-01 98.1% 57.9%
5076911 7512.1.1.61 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_2 0.60 54.0 4.55e-01 100.0% 74.4%
5078531 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.59 48.0 3.95e-01 90.6% 68.6%
3732376 2003.1.4.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › PNTB 0.59 46.0 3.79e-01 82.1% 74.1%
4997989 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.59 52.0 4.53e-01 98.1% 78.8%
3289768 7512.1.1.61 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_2 0.59 52.0 4.37e-01 98.1% 71.7%
4017363 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.58 46.0 3.56e-01 87.7% 88.0%
5056903 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.58 52.0 4.25e-01 99.1% 69.7%
3937883 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.58 48.0 3.89e-01 94.3% 84.4%
3954289 2002.1.1.221 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF5131 0.58 40.0 3.18e-01 72.6% 83.3%
4929745 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.57 46.0 4.32e-01 87.7% 82.0%
3910006 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.57 44.0 3.60e-01 84.9% 91.8%
3233285 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.57 46.0 3.83e-01 88.7% 87.2%
4964605 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.57 51.0 4.17e-01 99.1% 69.7%
5009873 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.57 51.0 4.27e-01 99.1% 72.8%
4974692 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.57 50.0 4.17e-01 99.1% 69.2%
3781974 2006.1.6.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ssl1 0.57 50.0 3.99e-01 100.0% 84.4%
3269296 2006.1.6.22 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF5920 0.57 47.0 3.90e-01 93.4% 83.5%
4007872 2003.1.7.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › DeoRC 0.56 40.0 3.32e-01 74.5% 86.5%
138981 2007.2.1.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.56 43.0 3.63e-01 82.1% 87.9%
3707610 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.56 43.0 3.21e-01 84.9% 82.6%
3630024 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.56 42.0 3.08e-01 82.1% 64.4%
3757892 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.55 39.0 4.09e-01 73.6% 93.7%
3247943 2006.1.6.40 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF7788 0.55 44.0 3.73e-01 87.7% 84.9%
5044647 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 46.0 4.11e-01 93.4% 100.0%
1005149 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.55 42.0 3.12e-01 83.0% 96.1%
4329069 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.55 44.0 3.30e-01 91.5% 88.2%
3901824 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.54 41.0 3.08e-01 83.0% 81.6%
4996687 2004.1.1.175 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.54 43.0 3.21e-01 88.7% 80.7%
4979003 7584.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.51 39.0 3.45e-01 84.0% 82.9%