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SRR1747052_scaffold_7_prodigal-single.1__X__X__00176
Bact-VirSRR1747052_scaffold_7_prodigal-single.1__X__X__00176
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-95
Domain cluster:
rep: SRR1747018_scaffold_13_prodigal-single.1__X__X__00037__D1-65
D2
high
residues 104-234
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 51.0 | 5.85e-01 | 91.6% | 93.9% |
| 3b73B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 45.0 | 5.34e-01 | 88.5% | 87.6% |
| 2l4mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 38.0 | 5.16e-01 | 85.5% | 98.6% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 48.0 | 5.35e-01 | 85.5% | 87.4% |
| 3pfiA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 38.0 | 4.94e-01 | 79.4% | 95.9% |
| 3gwzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 42.0 | 5.00e-01 | 77.1% | 89.9% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 45.0 | 5.17e-01 | 94.7% | 96.8% |
| 4d7kA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 43.0 | 4.89e-01 | 80.2% | 89.6% |
| 4yifF00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 42.0 | 4.31e-01 | 93.9% | 66.2% |
| 7pzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 41.0 | 4.88e-01 | 87.0% | 95.3% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.65 | 44.0 | 4.15e-01 | 83.2% | 57.7% |
| 3to7A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 37.0 | 4.57e-01 | 71.8% | 96.3% |
| 2fxaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 40.0 | 3.84e-01 | 94.7% | 55.1% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 42.0 | 4.67e-01 | 86.3% | 91.1% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 39.0 | 4.05e-01 | 93.1% | 70.2% |
| 4cgyA02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.58 | 46.0 | 4.10e-01 | 84.7% | 86.3% |
| 1vs5O00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.54 | 36.0 | 4.27e-01 | 84.0% | 100.0% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.52 | 33.0 | 3.42e-01 | 97.7% | 66.9% |
| 3t5vA00 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 40.0 | 3.06e-01 | 90.1% | 36.1% |
| 3c7jA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 32.0 | 3.68e-01 | 90.1% | 89.0% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.50 | 32.0 | 3.45e-01 | 80.2% | 75.2% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507464 | 101.1.2.397 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 | 0.76 | 47.0 | 5.71e-01 | 86.3% | 95.2% |
| 4028118 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 54.0 | 5.94e-01 | 92.4% | 90.5% |
| 3971509 | 101.1.2.851 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27731 | 0.75 | 49.0 | 5.72e-01 | 85.5% | 94.4% |
| 4315549 | 101.1.2.71 ↗ | alpha arrays › HTH › HTH › winged helix domain › RuvB_C | 0.73 | 44.0 | 4.95e-01 | 84.0% | 78.0% |
| 4544514 | 101.1.2.71 ↗ | alpha arrays › HTH › HTH › winged helix domain › RuvB_C | 0.73 | 43.0 | 4.92e-01 | 83.2% | 80.0% |
| 4462818 | 101.1.2.71 ↗ | alpha arrays › HTH › HTH › winged helix domain › RuvB_C | 0.72 | 40.0 | 4.84e-01 | 80.9% | 81.8% |
| 5079243 | 101.1.2.894 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2240 | 0.72 | 40.0 | 4.74e-01 | 81.7% | 78.9% |
| 3242401 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 49.0 | 5.71e-01 | 92.4% | 96.8% |
| 4981596 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 39.0 | 5.12e-01 | 80.9% | 98.6% |
| 3283039 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 44.0 | 4.29e-01 | 83.2% | 55.9% |
| None | — | 0.70 | 42.0 | 5.24e-01 | 84.0% | 97.5% | |
| 3744402 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.70 | 43.0 | 4.84e-01 | 93.9% | 80.0% |
| 3280479 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.68 | 41.0 | 4.84e-01 | 85.5% | 86.7% |
| 4950232 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 5.35e-01 | 95.4% | 98.9% |
| 5050212 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 43.0 | 4.92e-01 | 90.8% | 91.6% |
| 3505829 | 101.1.2.507 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 | 0.65 | 41.0 | 3.91e-01 | 81.7% | 54.0% |
| 5077926 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.65 | 44.0 | 4.45e-01 | 90.1% | 67.4% |
| 3989999 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 42.0 | 4.87e-01 | 83.2% | 92.6% |
| 4525548 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 42.0 | 4.66e-01 | 91.6% | 87.0% |
| 5044888 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.63 | 44.0 | 4.36e-01 | 87.8% | 67.1% |
| 4986928 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.62 | 39.0 | 4.61e-01 | 90.1% | 92.1% |
| 2807714 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 42.0 | 4.72e-01 | 88.5% | 90.1% |
| 3322119 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 5.08e-01 | 91.6% | 83.4% |
| 3452232 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 52.0 | 4.38e-01 | 93.1% | 81.9% |
| 4362777 | 101.1.2.5 ↗ | alpha arrays › HTH › HTH › winged helix domain › Crp | 0.60 | 41.0 | 4.56e-01 | 90.1% | 92.9% |
| 4984969 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 47.0 | 3.92e-01 | 84.7% | 91.0% |
| 3578447 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.59 | 47.0 | 4.12e-01 | 84.7% | 86.2% |
| 4210617 | 101.1.10.13 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF3452 | 0.58 | 43.0 | 4.16e-01 | 95.4% | 68.3% |
| 5054506 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.57 | 46.0 | 3.98e-01 | 84.7% | 83.6% |
| 3593805 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 46.0 | 3.28e-01 | 89.3% | 42.6% |
| 4490196 | 108.1.1.207 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30486 | 0.54 | 33.0 | 3.99e-01 | 79.4% | 97.5% |
| 4385268 | 101.1.1.70 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SANT_DAMP1_like | 0.53 | 35.0 | 3.51e-01 | 95.4% | 62.1% |
| 5000448 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.53 | 49.0 | 4.13e-01 | 99.2% | 97.6% |
| 3407956 | 101.1.2.265 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stork_head | 0.53 | 45.0 | 3.97e-01 | 90.8% | 90.5% |
| 5051524 | 3962.1.1.0 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit | 0.52 | 45.0 | 4.37e-01 | 97.7% | 90.7% |
| 4944651 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 44.0 | 4.17e-01 | 92.4% | 96.1% |
D3
medium
residues 279-348
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.75 | 42.0 | 3.46e-01 | 97.1% | 32.5% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.68 | 54.0 | 4.26e-01 | 85.7% | 42.1% |
| 2ljxA00 | 3.30.240.40 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein | 0.64 | 43.0 | 4.14e-01 | 70.0% | 78.0% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.64 | 48.0 | 3.98e-01 | 81.4% | 46.9% |
| 4kc9A02 | 1.20.120.1750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 42.0 | 2.93e-01 | 74.3% | 46.6% |
| 1euvA01 | 1.10.418.20 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › | 0.55 | 41.0 | 3.69e-01 | 84.3% | 80.0% |
| 4mqvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 30.0 | 3.15e-01 | 84.3% | 63.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4023525 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.76 | 54.0 | 4.77e-01 | 74.3% | 54.0% |
| 3732082 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.72 | 60.0 | 3.76e-01 | 88.6% | 26.1% |
| 3973966 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.69 | 47.0 | 4.18e-01 | 71.4% | 51.0% |
| 3259718 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.66 | 46.0 | 3.95e-01 | 71.4% | 79.0% |
| 3036062 | 4255.1.1.1 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 | 0.65 | 51.0 | 5.01e-01 | 84.3% | 97.4% |
| 3622196 | 604.1.1.63 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 | 0.61 | 44.0 | 3.69e-01 | 95.7% | 44.2% |
| 3841290 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 34.0 | 3.72e-01 | 70.0% | 70.9% |
| 4887544 | 604.27.1.5 ↗ | alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac › Cry1Ac_dom-VII | 0.57 | 38.0 | 3.25e-01 | 97.1% | 44.3% |
| 3209152 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.57 | 47.0 | 2.71e-01 | 88.6% | 12.4% |
| 3561754 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.57 | 37.0 | 4.11e-01 | 80.0% | 94.0% |
| 5082442 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 47.0 | 3.85e-01 | 95.7% | 50.0% |
| 5064040 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 46.0 | 3.35e-01 | 95.7% | 31.7% |
| 4019392 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 43.0 | 2.83e-01 | 91.4% | 77.5% |
| 3571398 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.51 | 41.0 | 3.03e-01 | 90.0% | 36.0% |