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SRR1747052_scaffold_7_prodigal-single.1__X__X__00185

Bact-Vir

SRR1747052_scaffold_7_prodigal-single.1__X__X__00185

Identity

Kingdom:
phage

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-93
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 27.6 3.80e-06 58.1% 78.6%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.59 41.0 3.52e-01 71.0% 77.6%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 37.0 3.04e-01 71.0% 58.0%
2lw7A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 36.0 3.40e-01 72.0% 82.5%
4bs9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 35.0 2.82e-01 72.0% 69.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3785991 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.64 44.0 4.33e-01 72.0% 100.0%
3197762 7502.1.1.7 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 0.59 43.0 4.06e-01 77.4% 86.1%
3077774 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 41.0 3.70e-01 73.1% 72.4%