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SRR1747052_scaffold_7_prodigal-single.1__X__X__00253
Bact-VirSRR1747052_scaffold_7_prodigal-single.1__X__X__00253
Identity
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-54
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dapA02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.70 | 61.0 | 4.36e-01 | 100.0% | 48.0% |
| 3r3pB00 | 3.40.960.10 | Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease | 0.68 | 58.0 | 4.74e-01 | 100.0% | 51.0% |
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.64 | 57.0 | 3.95e-01 | 100.0% | 43.8% |
| 2vldA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.64 | 56.0 | 4.40e-01 | 100.0% | 56.9% |
| 4p02B04 | 3.30.379.30 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › | 0.62 | 42.0 | 2.98e-01 | 72.5% | 53.5% |
| 5h41A01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.60 | 42.0 | 2.48e-01 | 74.5% | 55.2% |
| 1eptA00 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 37.0 | 3.91e-01 | 96.1% | 74.4% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.56 | 46.0 | 3.03e-01 | 100.0% | 29.9% |
| 4dzoA02 | 3.30.457.60 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.55 | 45.0 | 4.03e-01 | 98.0% | 70.1% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.54 | 38.0 | 3.49e-01 | 100.0% | 55.6% |
| 1wl8A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.53 | 44.0 | 3.02e-01 | 100.0% | 26.1% |
| 3kk7A01 | 3.30.420.400 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 44.0 | 3.57e-01 | 100.0% | 85.3% |
| 2f4qA01 | 3.30.66.10 | Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain | 0.53 | 37.0 | 3.36e-01 | 76.5% | 81.9% |
| 3ztvA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 42.0 | 2.60e-01 | 94.1% | 27.5% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 38.0 | 3.30e-01 | 78.4% | 62.0% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 39.0 | 3.25e-01 | 94.1% | 72.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5053767 | 2008.1.1.155 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc | 0.86 | 79.0 | 5.23e-01 | 100.0% | 29.2% |
| 5048986 | 2008.1.1.155 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc | 0.85 | 77.0 | 5.10e-01 | 100.0% | 28.9% |
| 4634054 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.81 | 73.0 | 5.39e-01 | 100.0% | 47.2% |
| 4027801 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.80 | 73.0 | 5.58e-01 | 100.0% | 50.0% |
| 4627062 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.76 | 67.0 | 4.60e-01 | 100.0% | 33.1% |
| 5032556 | 2008.1.1.5 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C | 0.73 | 59.0 | 5.26e-01 | 98.0% | 62.7% |
| 4464713 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.72 | 64.0 | 4.55e-01 | 100.0% | 48.7% |
| 3283255 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 61.0 | 5.05e-01 | 100.0% | 62.1% |
| 3590207 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.70 | 60.0 | 4.25e-01 | 98.0% | 38.7% |
| 4395485 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.68 | 57.0 | 4.14e-01 | 98.0% | 40.7% |
| 5032035 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 59.0 | 5.38e-01 | 100.0% | 78.6% |
| 5040990 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 58.0 | 4.51e-01 | 100.0% | 47.0% |
| 3959053 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 56.0 | 3.88e-01 | 100.0% | 67.0% |
| 3284762 | 4090.1.1.0 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like | 0.65 | 45.0 | 3.26e-01 | 74.5% | 69.7% |
| 4932253 | 2008.1.1.100 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 | 0.64 | 56.0 | 4.09e-01 | 100.0% | 51.0% |
| 5069139 | 2008.1.1.96 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RmuC | 0.61 | 52.0 | 3.69e-01 | 100.0% | 45.7% |
| 4240596 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.61 | 51.0 | 4.50e-01 | 100.0% | 83.7% |
| 3839271 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.60 | 42.0 | 3.07e-01 | 74.5% | 27.7% |
| 3299665 | 244.1.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE | 0.55 | 45.0 | 2.94e-01 | 98.0% | 23.6% |
| 3563387 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.55 | 41.0 | 2.47e-01 | 82.4% | 18.8% |
| 4942524 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.54 | 43.0 | 2.65e-01 | 100.0% | 46.7% |
| None | — | 0.54 | 46.0 | 2.78e-01 | 100.0% | 68.6% | |
| 3481588 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 40.0 | 3.11e-01 | 90.2% | 72.4% |
| None | — | 0.53 | 44.0 | 2.75e-01 | 100.0% | 67.0% | |
| 3649238 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.53 | 41.0 | 2.90e-01 | 90.2% | 76.8% |
| 4025181 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.52 | 38.0 | 3.08e-01 | 98.0% | 38.2% |
| 4139105 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.51 | 35.0 | 2.51e-01 | 72.5% | 21.8% |
| 2073550 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.51 | 41.0 | 2.89e-01 | 96.1% | 45.7% |