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SRR1747052_scaffold_7_prodigal-single.1__X__X__00281

Bact-Vir

SRR1747052_scaffold_7_prodigal-single.1__X__X__00281

Identity

Kingdom:
phage

Quality

87.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-89
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.58 27.0 3.37e-01 86.7% 70.2%
1uxyA03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 42.0 3.54e-01 88.0% 68.7%
5jzxD02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 42.0 3.51e-01 88.0% 64.4%
1ultB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 42.0 2.79e-01 97.6% 94.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3712524 375.1.1.77 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.68 42.0 4.96e-01 97.6% 92.7%
3598807 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 42.0 4.55e-01 97.6% 76.8%
4342241 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 41.0 2.71e-01 74.7% 16.9%
3592370 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.54 44.0 3.87e-01 86.7% 80.8%
3833034 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.53 44.0 2.77e-01 91.6% 54.3%
3400769 4099.1.1.21 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › RM3_Med14 0.52 42.0 3.33e-01 90.4% 97.8%
3605531 375.1.1.77 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.52 41.0 4.11e-01 84.3% 84.5%
3739884 1016.1.1.1 alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.50 34.0 3.00e-01 71.1% 86.0%
D2 high residues 146-225
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 25.0 3.01e-01 71.2% 69.1%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 41.0 3.01e-01 91.3% 40.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3456703 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.57 28.0 3.54e-01 80.0% 80.0%
5082452 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 40.0 2.82e-01 76.2% 85.9%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 27.0 2.62e-01 97.5% 36.7%
5052340 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 27.0 2.89e-01 83.7% 55.7%
3738632 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.82e-01 98.8% 87.4%
D3 medium residues 90-145
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24308.2 best DUF7487 29.0 1.30e-06 96.4% 20.9%