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SRR1747052_scaffold_7_prodigal-single.1__X__X__00281
Bact-VirSRR1747052_scaffold_7_prodigal-single.1__X__X__00281
Identity
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-89
Domain cluster:
rep: PHAGE-A9--js4906-26-5_S28_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00006__D87-154
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ce2A02 | 1.10.287.830 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like | 0.58 | 27.0 | 3.37e-01 | 86.7% | 70.2% |
| 1uxyA03 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.53 | 42.0 | 3.54e-01 | 88.0% | 68.7% |
| 5jzxD02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 42.0 | 3.51e-01 | 88.0% | 64.4% |
| 1ultB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.50 | 42.0 | 2.79e-01 | 97.6% | 94.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3712524 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.68 | 42.0 | 4.96e-01 | 97.6% | 92.7% |
| 3598807 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 42.0 | 4.55e-01 | 97.6% | 76.8% |
| 4342241 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.60 | 41.0 | 2.71e-01 | 74.7% | 16.9% |
| 3592370 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.54 | 44.0 | 3.87e-01 | 86.7% | 80.8% |
| 3833034 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.53 | 44.0 | 2.77e-01 | 91.6% | 54.3% |
| 3400769 | 4099.1.1.21 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › RM3_Med14 | 0.52 | 42.0 | 3.33e-01 | 90.4% | 97.8% |
| 3605531 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.52 | 41.0 | 4.11e-01 | 84.3% | 84.5% |
| 3739884 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.50 | 34.0 | 3.00e-01 | 71.1% | 86.0% |
D2
high
residues 146-225
Domain cluster:
representative
CATH (2)
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3456703 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.57 | 28.0 | 3.54e-01 | 80.0% | 80.0% |
| 5082452 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.55 | 40.0 | 2.82e-01 | 76.2% | 85.9% |
| 3783976 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.55 | 27.0 | 2.62e-01 | 97.5% | 36.7% |
| 5052340 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 27.0 | 2.89e-01 | 83.7% | 55.7% |
| 3738632 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 41.0 | 2.82e-01 | 98.8% | 87.4% |
D3
medium
residues 90-145
Domain cluster:
rep: zinc-ribbon-containing_protein__YP_003407073__Marseillevirus_marseillevirus__694581__D374-426
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24308.2 best | DUF7487 | 29.0 | 1.30e-06 | 96.4% | 20.9% |