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SRR1747052_scaffold_7_prodigal-single.1__X__X__00286
Bact-VirSRR1747052_scaffold_7_prodigal-single.1__X__X__00286
Identity
- Kingdom:
- phage
Quality
67.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 262-314
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6hxpA01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.67 | 43.0 | 3.56e-01 | 71.7% | 35.4% |
| 1j8uA00 | 1.10.800.10 | Mainly Alpha › Orthogonal Bundle › Phenylalanine Hydroxylase › Aromatic amino acid hydroxylase | 0.62 | 51.0 | 3.24e-01 | 98.1% | 66.8% |
| 3foeA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.62 | 51.0 | 4.75e-01 | 96.2% | 75.4% |
| 1wj7A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 48.0 | 4.65e-01 | 90.6% | 81.7% |
| 1dgnA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.59 | 49.0 | 4.21e-01 | 96.2% | 89.9% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 48.0 | 2.82e-01 | 98.1% | 37.0% |
| 1vb3A01 | 3.90.1380.10 | Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain | 0.58 | 40.0 | 3.51e-01 | 92.5% | 46.9% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 43.0 | 4.12e-01 | 96.2% | 71.6% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.07e-01 | 81.1% | 85.2% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.13e-01 | 75.5% | 95.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3085 | 103.1.1.84 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28540 | 0.61 | 48.0 | 4.13e-01 | 92.5% | 60.4% |
| 4033799 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.60 | 46.0 | 4.66e-01 | 90.6% | 94.0% |
| 5041057 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 47.0 | 3.81e-01 | 84.9% | 67.4% |
| 4068222 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.58 | 45.0 | 4.62e-01 | 98.1% | 100.0% |
| 5006976 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 3.40e-01 | 98.1% | 87.2% |
| 1935905 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.57 | 34.0 | 2.56e-01 | 75.5% | 22.6% |
| 3711598 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.56 | 46.0 | 3.63e-01 | 100.0% | 68.5% |
| 3279482 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.56 | 42.0 | 2.79e-01 | 88.7% | 61.8% |
| 4975730 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 43.0 | 3.98e-01 | 88.7% | 74.3% |
| 3800383 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 39.0 | 3.74e-01 | 90.6% | 66.2% |
| 4027638 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.53 | 42.0 | 3.45e-01 | 100.0% | 67.5% |
D2
medium
residues 22-122
D3
medium
residues 196-261
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xviA02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.71 | 51.0 | 4.56e-01 | 77.3% | 100.0% |
| 7xhzA01 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.62 | 45.0 | 3.73e-01 | 78.8% | 100.0% |
| 1u5tA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 42.0 | 4.07e-01 | 74.2% | 97.3% |
| 2amyA02 | 3.30.1240.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain | 0.59 | 44.0 | 3.95e-01 | 84.8% | 97.1% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 3.71e-01 | 72.7% | 98.9% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 39.0 | 3.61e-01 | 71.2% | 80.9% |
| 4a6dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 41.0 | 3.74e-01 | 77.3% | 79.8% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.57 | 31.0 | 2.34e-01 | 83.3% | 18.9% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 38.0 | 3.36e-01 | 71.2% | 72.8% |
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.89e-01 | 72.7% | 93.9% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.59e-01 | 77.3% | 74.4% |
| 1khvA04 | 6.10.140.320 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 36.0 | 3.84e-01 | 100.0% | 87.0% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.54 | 39.0 | 3.07e-01 | 80.3% | 63.5% |
| 1jg8A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 39.0 | 3.56e-01 | 81.8% | 76.0% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 3.27e-01 | 71.2% | 97.9% |
| 2v4jB01 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 2.88e-01 | 72.7% | 42.4% |
| 1vnsA01 | 1.20.144.10 | Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase | 0.52 | 43.0 | 3.20e-01 | 93.9% | 81.7% |
| 3l09A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.39e-01 | 74.2% | 75.0% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.32e-01 | 72.7% | 66.7% |
| 4hw0C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.16e-01 | 71.2% | 59.1% |
| 3df8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.00e-01 | 71.2% | 53.2% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.25e-01 | 72.7% | 75.9% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 40.0 | 3.43e-01 | 89.4% | 67.9% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 42.0 | 3.02e-01 | 100.0% | 67.6% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 42.0 | 2.71e-01 | 98.5% | 38.2% |
| 3pcoB04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.50 | 34.0 | 3.30e-01 | 78.8% | 62.7% |
| 1z6tA04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 34.0 | 3.23e-01 | 72.7% | 64.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4132402 | 140.1.1.7 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 | 0.68 | 51.0 | 3.66e-01 | 80.3% | 97.9% |
| None | — | 0.67 | 51.0 | 3.68e-01 | 80.3% | 99.5% | |
| None | — | 0.67 | 50.0 | 3.67e-01 | 80.3% | 98.9% | |
| 4147839 | 140.1.1.21 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e, CysS_C | 0.65 | 48.0 | 3.40e-01 | 80.3% | 94.1% |
| 4508118 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.62 | 50.0 | 3.52e-01 | 89.4% | 45.9% |
| 5027292 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 42.0 | 3.05e-01 | 72.7% | 46.8% |
| 4375524 | 2006.1.1.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP | 0.61 | 50.0 | 3.52e-01 | 97.0% | 44.5% |
| 4433372 | 192.11.1.2 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › CysS_C | 0.61 | 48.0 | 3.49e-01 | 84.8% | 86.5% |
| 4993845 | 320.3.1.4 ↗ | a+b two layers › R3H domain-like › PG1857-like › PG1857-like › DUF483 | 0.61 | 40.0 | 3.10e-01 | 72.7% | 29.0% |
| 4119293 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.61 | 51.0 | 3.42e-01 | 93.9% | 48.5% |
| 3615529 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.60 | 43.0 | 3.17e-01 | 78.8% | 100.0% |
| 3467991 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.60 | 41.0 | 3.04e-01 | 87.9% | 24.5% |
| 2075912 | 3012.1.1.2 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PMM | 0.59 | 44.0 | 3.91e-01 | 83.3% | 97.0% |
| 3706636 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.58 | 41.0 | 3.88e-01 | 75.8% | 80.0% |
| 4464145 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.57 | 45.0 | 3.20e-01 | 89.4% | 29.8% |
| 4929483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.57 | 41.0 | 3.47e-01 | 78.8% | 61.7% |
| 4465068 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.56 | 41.0 | 2.95e-01 | 93.9% | 24.7% |
| 4955611 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.56 | 40.0 | 3.47e-01 | 75.8% | 67.3% |
| 5063691 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.56 | 39.0 | 3.70e-01 | 75.8% | 80.0% |
| 5046227 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 3.44e-01 | 71.2% | 82.4% |
| 4973555 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 37.0 | 2.80e-01 | 71.2% | 42.9% |
| 4954867 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 3.54e-01 | 71.2% | 69.3% |
| 3786023 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.53 | 42.0 | 2.99e-01 | 92.4% | 45.4% |
| 5037085 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 36.0 | 3.39e-01 | 74.2% | 78.9% |
| 5057691 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.52 | 35.0 | 3.39e-01 | 71.2% | 76.2% |
| 4188072 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.52 | 36.0 | 3.40e-01 | 72.7% | 82.5% |
| 5022894 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 35.0 | 3.14e-01 | 71.2% | 65.3% |
| 4941358 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 35.0 | 3.32e-01 | 71.2% | 66.3% |
| 5033726 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.51 | 34.0 | 3.06e-01 | 71.2% | 50.0% |
| 4251492 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.50 | 34.0 | 3.32e-01 | 78.8% | 62.7% |
| 3931590 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.50 | 42.0 | 2.98e-01 | 100.0% | 47.3% |
| 5054757 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 35.0 | 2.96e-01 | 75.8% | 65.0% |