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SRR1747052_scaffold_7_prodigal-single.1__X__X__00302
Bact-VirSRR1747052_scaffold_7_prodigal-single.1__X__X__00302
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-75
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 32.0 | 3.45e-01 | 84.1% | 50.0% |
| 2itaA01 | 1.20.5.920 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › rhodobacter sphaeroides pufx membrane protein | 0.68 | 38.0 | 4.16e-01 | 78.3% | 67.9% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 4.31e-01 | 73.9% | 61.2% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 50.0 | 4.56e-01 | 84.1% | 98.9% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 43.0 | 4.04e-01 | 72.5% | 96.6% |
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 46.0 | 3.64e-01 | 76.8% | 41.1% |
| 2d8xA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.63 | 49.0 | 4.95e-01 | 85.5% | 97.1% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 42.0 | 3.29e-01 | 71.0% | 44.2% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 43.0 | 4.12e-01 | 78.3% | 100.0% |
| 2dj7A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.61 | 45.0 | 4.31e-01 | 79.7% | 86.3% |
| 4kc9A02 | 1.20.120.1750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 45.0 | 3.15e-01 | 81.2% | 52.0% |
| 2dsmA00 | 3.30.40.30 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › YqaI domain | 0.59 | 40.0 | 4.03e-01 | 92.8% | 68.1% |
| 1wffA00 | 4.10.1110.10 | Few Secondary Structures › Irregular › Zf-an1 domain › AN1-like Zinc finger | 0.59 | 44.0 | 4.11e-01 | 79.7% | 65.9% |
| 1j2oA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.58 | 41.0 | 3.53e-01 | 75.4% | 76.3% |
| 2mbvA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.57 | 42.0 | 3.80e-01 | 78.3% | 75.0% |
| 2d8yA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.56 | 44.0 | 4.44e-01 | 89.9% | 95.8% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.49e-01 | 71.0% | 85.4% |
| 2ijlB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.60e-01 | 81.2% | 66.1% |
| 2co8A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.55 | 44.0 | 4.19e-01 | 88.4% | 82.9% |
| 1d5aA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.55 | 50.0 | 3.74e-01 | 100.0% | 93.9% |
| 6pwkA02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.54 | 38.0 | 2.59e-01 | 72.5% | 35.5% |
| 5mmjb01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.54 | 43.0 | 3.38e-01 | 85.5% | 63.8% |
| 1tvzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 42.0 | 3.31e-01 | 87.0% | 40.8% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.39e-01 | 84.1% | 63.7% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.51 | 39.0 | 2.97e-01 | 81.2% | 73.7% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3742588 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.82 | 52.0 | 6.21e-01 | 71.0% | 100.0% |
| 3634446 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 43.0 | 5.13e-01 | 92.8% | 100.0% |
| 3723227 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.68 | 46.0 | 4.42e-01 | 71.0% | 100.0% |
| 3336883 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.67 | 43.0 | 5.15e-01 | 95.7% | 100.0% |
| 3928956 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.66 | 44.0 | 4.90e-01 | 92.8% | 87.3% |
| 3636589 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 48.0 | 4.43e-01 | 79.7% | 97.8% |
| 3300469 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.65 | 42.0 | 4.88e-01 | 89.9% | 92.0% |
| 3692487 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.64 | 48.0 | 4.25e-01 | 79.7% | 86.0% |
| 4940794 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.64 | 44.0 | 4.96e-01 | 71.0% | 100.0% |
| 4023525 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 42.0 | 3.76e-01 | 73.9% | 48.0% |
| 3326051 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.63 | 46.0 | 4.14e-01 | 76.8% | 91.6% |
| 5061253 | 376.1.3.97 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 | 0.62 | 46.0 | 4.48e-01 | 81.2% | 81.2% |
| 3828987 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.62 | 44.0 | 3.97e-01 | 73.9% | 89.5% |
| 3430765 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.62 | 44.0 | 3.92e-01 | 73.9% | 89.0% |
| None | — | 0.59 | 42.0 | 4.59e-01 | 97.1% | 92.7% | |
| 5001950 | 266.1.1.1 ↗ | a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt | 0.58 | 42.0 | 2.87e-01 | 76.8% | 66.7% |
| 3520738 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.58 | 50.0 | 3.87e-01 | 97.1% | 59.4% |
| 4953298 | 101.1.2.934 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N | 0.58 | 41.0 | 3.35e-01 | 75.4% | 41.5% |
| 3893762 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.56 | 41.0 | 4.03e-01 | 78.3% | 84.0% |
| 3256364 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.56 | 48.0 | 4.79e-01 | 95.7% | 100.0% |
| 5002415 | 101.1.2.728 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF31122 | 0.55 | 38.0 | 3.32e-01 | 73.9% | 48.2% |
| 3470972 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.52 | 42.0 | 4.43e-01 | 91.3% | 100.0% |
| None | — | 0.52 | 44.0 | 3.55e-01 | 95.7% | 48.1% | |
| 3435304 | 376.1.1.52 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM | 0.50 | 42.0 | 4.31e-01 | 94.2% | 100.0% |
D2
medium
residues 76-164
Domain cluster:
rep: SRR1747018_scaffold_13_prodigal-single.1__X__X__00227__D3-83