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SRR1747053_scaffold_1_prodigal-single.1__X__X__00199
Bact-VirSRR1747053_scaffold_1_prodigal-single.1__X__X__00199
Identity
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-92
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.66 | 51.0 | 4.19e-01 | 100.0% | 45.8% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.65 | 57.0 | 5.23e-01 | 100.0% | 81.6% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 55.0 | 4.40e-01 | 100.0% | 49.3% |
| 4iglB00 | 2.180.10.10 | Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core | 0.62 | 56.0 | 3.24e-01 | 100.0% | 13.1% |
| 2b5lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 53.0 | 3.44e-01 | 100.0% | 49.5% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 51.0 | 4.62e-01 | 100.0% | 75.2% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.60 | 48.0 | 4.21e-01 | 90.4% | 67.2% |
| 1nnvA01 | 3.10.450.140 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative | 0.60 | 50.0 | 4.48e-01 | 90.4% | 97.0% |
| 6eotD01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.60 | 52.0 | 3.15e-01 | 100.0% | 21.6% |
| 3pzfA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.60 | 47.0 | 3.58e-01 | 86.3% | 80.3% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.60 | 49.0 | 4.37e-01 | 90.4% | 66.3% |
| 3v0rA01 | 2.40.350.20 | Mainly Beta › Beta Barrel › AOC barrel-like › | 0.59 | 48.0 | 4.14e-01 | 90.4% | 86.7% |
| 1vavA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 52.0 | 3.73e-01 | 100.0% | 39.6% |
| 1v0fA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.59 | 50.0 | 3.26e-01 | 100.0% | 31.9% |
| 4m0hA01 | 2.60.120.1440 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 47.0 | 3.82e-01 | 89.0% | 64.7% |
| 4g7nA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 51.0 | 4.33e-01 | 100.0% | 61.2% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.57 | 47.0 | 3.76e-01 | 93.2% | 66.9% |
| 2mqdA00 | 3.30.1460.60 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.57 | 50.0 | 4.32e-01 | 100.0% | 70.6% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.56 | 41.0 | 4.02e-01 | 87.7% | 71.2% |
| 3gekA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 43.0 | 3.66e-01 | 86.3% | 91.6% |
| 4i79A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 48.0 | 3.22e-01 | 100.0% | 27.5% |
| 1b7yA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 42.0 | 2.94e-01 | 84.9% | 80.0% |
| 3qz4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 45.0 | 3.06e-01 | 100.0% | 34.3% |
| 1dc1A01 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.53 | 46.0 | 3.33e-01 | 100.0% | 50.5% |
| 7erlA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 3.47e-01 | 100.0% | 40.2% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.52 | 45.0 | 4.04e-01 | 94.5% | 81.7% |
| 3bgaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 45.0 | 3.11e-01 | 100.0% | 95.9% |
| 1i1jB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 37.0 | 3.41e-01 | 78.1% | 94.2% |
| 2jxpA01 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 40.0 | 3.35e-01 | 90.4% | 92.9% |
| 1ep5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 39.0 | 3.72e-01 | 83.6% | 82.6% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 43.0 | 3.43e-01 | 98.6% | 62.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3781393 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.67 | 55.0 | 5.27e-01 | 93.2% | 77.4% |
| 1349783 | 3347.1.1.1 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 | 0.65 | 57.0 | 5.23e-01 | 100.0% | 81.6% |
| 3878170 | 5.1.4.549 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28327 | 0.63 | 55.0 | 3.63e-01 | 100.0% | 33.8% |
| 3832257 | 844.1.1.1 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub | 0.63 | 55.0 | 3.83e-01 | 100.0% | 40.5% |
| 3309425 | 844.1.1.1 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub | 0.62 | 54.0 | 3.69e-01 | 100.0% | 37.8% |
| 3505993 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 53.0 | 3.48e-01 | 100.0% | 29.6% |
| 3715600 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 52.0 | 3.25e-01 | 100.0% | 23.3% |
| 4295817 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.61 | 50.0 | 4.15e-01 | 90.4% | 52.3% |
| 3512069 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.60 | 52.0 | 3.88e-01 | 100.0% | 37.0% |
| 5052931 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 51.0 | 3.29e-01 | 100.0% | 24.3% |
| 3830571 | 844.1.1.5 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 | 0.60 | 52.0 | 3.79e-01 | 98.6% | 50.7% |
| 3966547 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.59 | 53.0 | 4.77e-01 | 100.0% | 71.0% |
| 4577518 | 9.1.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › His_binding | 0.59 | 42.0 | 3.18e-01 | 87.7% | 31.1% |
| 4031135 | 6043.1.1.3 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N | 0.58 | 41.0 | 3.88e-01 | 75.3% | 62.4% |
| 3700130 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.58 | 49.0 | 3.28e-01 | 98.6% | 30.3% |
| 3613250 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 49.0 | 3.04e-01 | 100.0% | 39.0% |
| 3032521 | 5.1.3.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 | 0.57 | 45.0 | 2.95e-01 | 87.7% | 26.4% |
| 3782888 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.57 | 45.0 | 3.09e-01 | 87.7% | 43.6% |
| 3593349 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 47.0 | 3.14e-01 | 93.2% | 35.4% |
| 3260335 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.56 | 46.0 | 3.05e-01 | 100.0% | 25.1% |
| 4563304 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.55 | 47.0 | 3.12e-01 | 100.0% | 42.4% |
| 3415735 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.55 | 48.0 | 4.48e-01 | 100.0% | 76.8% |
| 3174725 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 46.0 | 3.01e-01 | 100.0% | 44.5% |
| 3779483 | 5.1.4.136 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ig_3 | 0.54 | 46.0 | 2.84e-01 | 100.0% | 17.3% |
| 5003221 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.53 | 47.0 | 4.05e-01 | 98.6% | 63.5% |
| 5064370 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.52 | 40.0 | 3.57e-01 | 83.6% | 76.9% |
| 4330393 | 243.3.1.23 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3027 | 0.52 | 38.0 | 3.64e-01 | 100.0% | 65.9% |