←Back to structures
SRR1747055_scaffold_2_prodigal-single.1__X__X__00076
Bact-VirSRR1747055_scaffold_2_prodigal-single.1__X__X__00076
Identity
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-99
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8jx6B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.80 | 72.0 | 5.21e-01 | 100.0% | 96.5% |
| 3v4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 71.0 | 4.83e-01 | 100.0% | 95.5% |
| 4nl4H03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 71.0 | 5.15e-01 | 100.0% | 91.8% |
| 4xjxA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 67.0 | 4.94e-01 | 95.9% | 99.0% |
| 8fazD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 69.0 | 4.74e-01 | 97.3% | 92.6% |
| 6eudA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 65.0 | 4.99e-01 | 98.6% | 83.5% |
| 1rz3A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 66.0 | 4.93e-01 | 100.0% | 100.0% |
| 1rifA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 65.0 | 4.80e-01 | 100.0% | 63.0% |
| 1up7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.73 | 62.0 | 5.12e-01 | 97.3% | 76.6% |
| 4w7sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 63.0 | 4.71e-01 | 100.0% | 66.7% |
| 1qz9A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.70 | 61.0 | 4.21e-01 | 100.0% | 49.4% |
| 2hoeA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.68 | 51.0 | 4.11e-01 | 80.8% | 71.7% |
| 7pcrA01 | 3.40.50.10710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Metallo-hydrolase/oxidoreductase | 0.68 | 59.0 | 4.70e-01 | 98.6% | 99.3% |
| 7nadx02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 58.0 | 4.14e-01 | 100.0% | 88.6% |
| 3brqB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 58.0 | 4.73e-01 | 100.0% | 79.9% |
| 5yszA03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 57.0 | 4.72e-01 | 100.0% | 82.7% |
| 2o20A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 56.0 | 4.64e-01 | 97.3% | 81.8% |
| 3c3kA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 57.0 | 4.68e-01 | 98.6% | 93.5% |
| 1m0sA01 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 58.0 | 4.66e-01 | 100.0% | 91.8% |
| 1fuyB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 57.0 | 4.46e-01 | 100.0% | 75.6% |
| 3q41B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 55.0 | 4.27e-01 | 100.0% | 63.1% |
| 1q6zA03 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.65 | 55.0 | 4.22e-01 | 100.0% | 96.2% |
| 3dnfB01 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.63 | 54.0 | 4.94e-01 | 97.3% | 73.0% |
| 4q6bA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 53.0 | 4.46e-01 | 98.6% | 79.1% |
| 4ms4A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 52.0 | 4.02e-01 | 100.0% | 56.0% |
| 4evsA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 53.0 | 4.16e-01 | 100.0% | 64.9% |
| 3lmkA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 52.0 | 4.13e-01 | 100.0% | 66.9% |
| 5l3qA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 53.0 | 3.93e-01 | 100.0% | 53.4% |
| 1qydA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 52.0 | 3.90e-01 | 95.9% | 53.4% |
| 4q6jB00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.61 | 48.0 | 3.41e-01 | 89.0% | 68.4% |
| 4j4hA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 52.0 | 4.43e-01 | 98.6% | 100.0% |
| 4i6kA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.60 | 49.0 | 3.48e-01 | 97.3% | 82.8% |
| 2mzbA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.59 | 50.0 | 3.80e-01 | 100.0% | 82.1% |
| 3u62A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 47.0 | 4.04e-01 | 95.9% | 64.8% |
| 1u04A03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 41.0 | 3.20e-01 | 83.6% | 43.8% |
| 4emiA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 3.51e-01 | 97.3% | 73.9% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.53 | 45.0 | 3.28e-01 | 100.0% | 37.6% |
| 4toiA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.52 | 43.0 | 3.41e-01 | 100.0% | 83.1% |
| 3btnA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.52 | 43.0 | 3.19e-01 | 100.0% | 100.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3368973 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 72.0 | 5.79e-01 | 100.0% | 58.5% |
| 3334202 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.78 | 70.0 | 5.58e-01 | 100.0% | 91.7% |
| 4153562 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.77 | 69.0 | 4.72e-01 | 100.0% | 84.8% |
| 3221095 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.76 | 68.0 | 5.48e-01 | 100.0% | 98.6% |
| 4029603 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.76 | 67.0 | 4.94e-01 | 100.0% | 85.1% |
| 3277872 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 64.0 | 5.11e-01 | 93.2% | 100.0% |
| 4091592 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.75 | 67.0 | 3.97e-01 | 100.0% | 33.2% |
| 3621730 | 2004.1.1.98 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17 | 0.75 | 67.0 | 4.97e-01 | 100.0% | 94.1% |
| 3351688 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 68.0 | 5.02e-01 | 100.0% | 75.0% |
| 3505081 | 2004.1.1.98 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17 | 0.75 | 67.0 | 4.90e-01 | 100.0% | 92.8% |
| 3320235 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.74 | 66.0 | 6.21e-01 | 100.0% | 96.7% |
| 1030910 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.74 | 65.0 | 4.78e-01 | 100.0% | 62.1% |
| 5000305 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.72 | 63.0 | 4.89e-01 | 100.0% | 83.6% |
| 3779694 | 2004.1.1.356 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SLFN_GTPase-like | 0.72 | 63.0 | 3.82e-01 | 100.0% | 32.3% |
| 3590886 | 2004.1.1.226 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N | 0.71 | 63.0 | 3.60e-01 | 100.0% | 28.5% |
| 4055952 | 2004.1.1.226 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N | 0.71 | 62.0 | 3.56e-01 | 100.0% | 48.0% |
| 3598923 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 61.0 | 4.48e-01 | 100.0% | 67.8% |
| 3648840 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.70 | 59.0 | 4.95e-01 | 94.5% | 100.0% |
| 3669607 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.69 | 60.0 | 4.95e-01 | 100.0% | 94.3% |
| 4184433 | 2007.1.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 | 0.69 | 60.0 | 4.85e-01 | 100.0% | 77.7% |
| 4161290 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.66 | 57.0 | 4.98e-01 | 100.0% | 99.1% |
| 3278541 | 7574.1.1.12 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › PDH_E1_M | 0.64 | 56.0 | 4.02e-01 | 100.0% | 85.7% |
| 3889408 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.64 | 52.0 | 4.13e-01 | 97.3% | 60.6% |
| 3940025 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.63 | 54.0 | 4.15e-01 | 100.0% | 69.2% |
| 4169125 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.62 | 51.0 | 4.07e-01 | 97.3% | 90.9% |
| 3589002 | 2007.1.2.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ABC_sub_bind | 0.61 | 51.0 | 4.07e-01 | 97.3% | 74.4% |
| 3512774 | 7590.1.1.6 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › ArgoMid | 0.61 | 45.0 | 3.51e-01 | 82.2% | 40.6% |
| 3665790 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.60 | 41.0 | 3.76e-01 | 75.3% | 52.0% |
| 5001674 | 2003.1.1.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 | 0.60 | 52.0 | 4.28e-01 | 100.0% | 93.5% |
| 4972273 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.59 | 52.0 | 3.77e-01 | 97.3% | 64.4% |
| 2482479 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.59 | 40.0 | 4.41e-01 | 76.7% | 96.4% |
| 3719197 | 2003.4.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes | 0.57 | 47.0 | 3.75e-01 | 97.3% | 92.9% |