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SRR1747055_scaffold_2_prodigal-single.1__X__X__00115

Bact-Vir

SRR1747055_scaffold_2_prodigal-single.1__X__X__00115

Identity

Kingdom:
phage

Quality

88.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-95_159-192
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rijA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 3.86e-01 100.0% 60.8%
D2 high residues 100-149
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c6rA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.61 49.0 3.42e-01 88.0% 97.5%
2raeA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 41.0 3.11e-01 98.0% 65.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3264584 5010.1.1.0 ↗ extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV 0.64 43.0 4.35e-01 90.0% 70.0%
3987421 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.62 48.0 4.44e-01 86.0% 86.2%
3632182 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.59 44.0 3.73e-01 80.0% 74.7%
3484968 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.59 44.0 2.82e-01 80.0% 23.5%