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SRR1747055_scaffold_2_prodigal-single.1__X__X__00180

Bact-Vir

SRR1747055_scaffold_2_prodigal-single.1__X__X__00180

Identity

Kingdom:
phage

Quality

68.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-71
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.71 55.0 3.83e-01 83.1% 93.3%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.70 63.0 5.48e-01 100.0% 84.4%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.70 62.0 5.39e-01 100.0% 92.7%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 58.0 3.76e-01 97.2% 91.0%
2xu7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 56.0 3.54e-01 93.0% 90.0%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.66 58.0 3.75e-01 97.2% 88.1%
2pagA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.66 58.0 4.78e-01 100.0% 68.9%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.66 50.0 4.35e-01 81.7% 89.8%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 56.0 3.69e-01 97.2% 92.1%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 45.0 4.56e-01 71.8% 73.9%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 56.0 3.70e-01 97.2% 97.4%
5hqgA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 54.0 3.56e-01 95.8% 89.8%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 48.0 4.48e-01 80.3% 75.6%
5h1kA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 54.0 3.47e-01 95.8% 94.2%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.32e-01 93.0% 42.9%
2vldB01 2.70.180.20 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › 0.61 49.0 4.16e-01 87.3% 81.4%
1flgA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.61 51.0 3.06e-01 95.8% 89.5%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.40e-01 97.2% 96.2%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.60 45.0 4.58e-01 100.0% 84.1%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.60 48.0 3.56e-01 88.7% 45.5%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.58 48.0 2.84e-01 95.8% 83.6%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.58 43.0 4.27e-01 94.4% 74.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 45.0 4.54e-01 95.8% 84.7%
3sk2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 51.0 4.16e-01 100.0% 80.3%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 51.0 4.11e-01 100.0% 73.1%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 42.0 4.01e-01 100.0% 68.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.55 45.0 4.40e-01 93.0% 91.3%
1a48A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 49.0 4.24e-01 98.6% 82.9%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.55 43.0 3.19e-01 85.9% 83.1%
3ct8A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 49.0 4.00e-01 100.0% 85.7%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 46.0 3.49e-01 97.2% 74.7%
3pqhA01 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.55 37.0 3.95e-01 70.4% 81.7%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 42.0 4.16e-01 94.4% 80.0%
4mymA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 48.0 3.78e-01 100.0% 74.2%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.96e-01 93.0% 96.0%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 39.0 3.64e-01 88.7% 61.8%
5lm7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.66e-01 74.6% 80.8%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.81e-01 84.5% 95.6%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 45.0 4.07e-01 97.2% 81.8%
4pbpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.11e-01 90.1% 74.3%
5gu6A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 41.0 3.79e-01 100.0% 65.3%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 43.0 3.40e-01 94.4% 80.5%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.51 39.0 2.80e-01 88.7% 91.3%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.74e-01 77.5% 95.8%
2je6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.54e-01 80.3% 84.1%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 31.0 3.09e-01 80.3% 60.3%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 41.0 4.02e-01 93.0% 91.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1677788 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.74 51.0 4.75e-01 76.1% 58.0%
4947558 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.73 60.0 5.47e-01 94.4% 68.9%
3578425 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.71 49.0 3.03e-01 71.8% 31.2%
3600232 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.70 52.0 3.78e-01 80.3% 64.0%
3308887 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.69 59.0 3.67e-01 95.8% 73.0%
3253856 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.69 61.0 5.09e-01 100.0% 76.8%
5073587 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.69 57.0 5.17e-01 97.2% 67.4%
4944335 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.68 56.0 5.10e-01 94.4% 67.7%
3391117 5.1.11.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.68 55.0 3.57e-01 91.5% 78.0%
4023063 216.1.1.8 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Knl1_RWD_C 0.68 52.0 4.79e-01 84.5% 89.5%
3613739 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 56.0 3.12e-01 91.5% 28.4%
4929392 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 53.0 4.93e-01 93.0% 67.8%
3720216 192.8.1.234 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › WD40 0.67 55.0 3.32e-01 91.5% 55.1%
4104948 5.1.3.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TrAA12 0.66 46.0 2.88e-01 71.8% 17.7%
3248495 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 54.0 3.51e-01 91.5% 84.3%
3614325 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.66 51.0 4.67e-01 84.5% 76.8%
4074857 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 56.0 3.62e-01 97.2% 78.6%
3973968 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.65 51.0 3.11e-01 83.1% 90.8%
5074928 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.65 52.0 5.38e-01 93.0% 92.3%
3714031 5.1.3.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Pep3_Vps18 0.65 47.0 3.51e-01 77.5% 78.9%
3576490 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 56.0 3.19e-01 97.2% 36.3%
3245738 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.65 57.0 4.98e-01 100.0% 83.6%
None — 0.64 54.0 3.51e-01 95.8% 95.6%
4981525 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 51.0 4.99e-01 95.8% 78.5%
3700775 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.63 50.0 4.58e-01 87.3% 74.7%
3634343 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.63 52.0 3.13e-01 90.1% 79.4%
4876314 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 51.0 3.40e-01 91.5% 73.4%
3994644 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 55.0 3.11e-01 100.0% 48.4%
3621408 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.62 49.0 3.19e-01 85.9% 46.5%
3803383 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.62 49.0 3.21e-01 87.3% 64.5%
3921043 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.17e-01 87.3% 62.6%
3241615 5.1.4.269 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.62 52.0 3.36e-01 94.4% 95.4%
3494647 4099.1.1.20 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.62 50.0 4.86e-01 88.7% 87.5%
3632998 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.62 49.0 3.07e-01 87.3% 87.7%
3331028 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 53.0 3.33e-01 100.0% 32.8%
4969651 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 49.0 3.34e-01 91.5% 90.5%
4029623 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 51.0 3.02e-01 91.5% 24.8%
3479080 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 52.0 4.84e-01 94.4% 81.8%
3618412 5.1.11.24 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_Aladin 0.60 54.0 3.31e-01 100.0% 31.8%
3563261 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 50.0 3.36e-01 93.0% 55.7%
3272708 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 50.0 4.81e-01 91.5% 86.3%
3992359 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.60 53.0 4.75e-01 98.6% 72.0%
4001295 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.59 48.0 3.14e-01 93.0% 62.5%
3706802 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.59 46.0 3.02e-01 87.3% 96.2%
3788978 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.59 51.0 4.31e-01 98.6% 90.0%
3978775 4200.1.1.1 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › YjbF 0.59 46.0 3.39e-01 85.9% 82.4%
3715045 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.59 47.0 4.79e-01 91.5% 91.4%
1837476 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.58 45.0 4.65e-01 97.2% 91.0%
5056748 5.1.3.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 0.58 50.0 3.23e-01 100.0% 83.5%
3710689 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 48.0 4.29e-01 94.4% 70.0%
3915890 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.56 45.0 3.96e-01 90.1% 95.5%
3707066 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.56 46.0 3.36e-01 94.4% 70.2%
3163656 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.56 47.0 3.07e-01 94.4% 76.4%
2363 4200.1.1.1 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › YjbF 0.55 43.0 3.19e-01 85.9% 83.1%
3884500 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.53 43.0 3.22e-01 97.2% 65.6%
3699568 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 36.0 3.71e-01 73.2% 84.3%
3565087 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.51 41.0 3.21e-01 97.2% 66.5%