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SRR1747055_scaffold_2_prodigal-single.1__X__X__00235

Bact-Vir

SRR1747055_scaffold_2_prodigal-single.1__X__X__00235

Identity

Kingdom:
phage

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-30_54-96_122-133
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pm9A02 2.20.25.400 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 26.0 4.06e-01 90.6% 96.7%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 21.0 3.05e-01 80.0% 54.8%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.53 30.0 3.05e-01 95.3% 57.3%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 21.0 2.81e-01 83.5% 64.9%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 34.0 2.75e-01 95.3% 35.4%
1lgpA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 29.0 2.61e-01 95.3% 41.6%
2f4mA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 26.0 3.08e-01 92.9% 78.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3176073 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 28.0 3.13e-01 96.5% 58.0%
4221721 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.52 25.0 2.74e-01 87.1% 53.3%
D2 medium residues 31-53_97-121_134-179
PDB
Domain cluster: representative