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SRR1747055_scaffold_2_prodigal-single.1__X__X__00254

Bact-Vir

SRR1747055_scaffold_2_prodigal-single.1__X__X__00254

Identity

Kingdom:
phage

Quality

52.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-50_436-474
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.74 53.0 5.41e-01 89.9% 76.9%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.68 51.0 5.26e-01 91.1% 86.3%
2lquA01 1.20.1420.40 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein 0.67 54.0 4.38e-01 88.6% 93.5%
2fphX01 3.30.1370.160 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.65 51.0 5.15e-01 93.7% 87.0%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 5.16e-01 92.4% 93.4%
2vs7A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 45.0 4.61e-01 92.4% 79.5%
3v97A03 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.61 47.0 4.61e-01 84.8% 98.8%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.60 43.0 4.18e-01 81.0% 68.6%
2opeA00 3.30.540.20 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.60 45.0 3.90e-01 79.7% 87.5%
4s2rP02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.59 45.0 3.59e-01 81.0% 75.9%
1vkwA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.59 47.0 4.13e-01 98.7% 57.0%
4v19R01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.59 53.0 4.71e-01 100.0% 96.4%
1zo0A00 3.40.630.60 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.58 45.0 4.00e-01 91.1% 55.6%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 49.0 4.74e-01 94.9% 84.4%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 44.0 3.30e-01 84.8% 54.3%
1sz7A00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.57 49.0 3.94e-01 96.2% 86.8%
3eo7A02 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.57 50.0 3.54e-01 100.0% 59.9%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 48.0 3.44e-01 97.5% 60.6%
1i9zA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.57 47.0 3.17e-01 94.9% 35.4%
2osoA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.56 49.0 3.97e-01 100.0% 81.5%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 45.0 3.59e-01 100.0% 42.8%
1t90A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 47.0 3.31e-01 97.5% 63.2%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 47.0 3.28e-01 94.9% 49.8%
3eo8A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 48.0 3.55e-01 98.7% 71.7%
4urpA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 46.0 3.60e-01 93.7% 75.3%
2oikA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.55 46.0 3.84e-01 92.4% 59.0%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 36.0 3.74e-01 74.7% 70.7%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 47.0 3.67e-01 97.5% 67.8%
5j62B00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 48.0 3.58e-01 100.0% 70.8%
3gr3A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 47.0 3.48e-01 100.0% 69.5%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 2.96e-01 88.6% 56.5%
2vycA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 48.0 3.59e-01 97.5% 82.6%
6iy8A01 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.53 46.0 3.57e-01 100.0% 78.8%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.53 48.0 3.63e-01 100.0% 74.5%
3ge5A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 44.0 3.47e-01 93.7% 63.6%
3l7xA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.53 42.0 3.51e-01 92.4% 52.2%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.62e-01 87.3% 63.5%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 44.0 3.80e-01 91.1% 88.5%
1emsA02 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.53 44.0 3.83e-01 96.2% 80.0%
3qpiA00 3.30.70.3420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.12e-01 83.5% 38.7%
1a3cA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.45e-01 94.9% 67.5%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.51 41.0 3.54e-01 86.1% 64.5%
2kilA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.51 43.0 3.45e-01 100.0% 97.2%
4ritA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 43.0 3.18e-01 98.7% 38.1%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.50 43.0 3.39e-01 98.7% 99.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3509317 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 66.0 5.66e-01 98.7% 88.3%
5010150 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.70 51.0 3.89e-01 77.2% 79.4%
4087039 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 61.0 6.12e-01 100.0% 96.2%
3605723 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 60.0 6.07e-01 98.7% 95.0%
4464030 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.68 49.0 3.05e-01 75.9% 89.1%
3196489 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.68 56.0 5.03e-01 91.1% 70.0%
3808192 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.65 58.0 3.89e-01 100.0% 35.3%
3263199 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.64 41.0 3.68e-01 100.0% 48.2%
4032112 2006.1.1.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.63 53.0 3.66e-01 93.7% 27.2%
4996772 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.63 54.0 4.34e-01 98.7% 89.7%
4997803 873.1.1.13 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase 0.62 54.0 4.29e-01 98.7% 86.4%
3930284 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.62 55.0 3.46e-01 100.0% 34.6%
4116230 2003.1.5.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.62 51.0 3.96e-01 91.1% 41.1%
3228509 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.61 56.0 4.65e-01 100.0% 63.0%
3976466 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.61 50.0 4.00e-01 88.6% 65.3%
4997830 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.60 52.0 4.18e-01 98.7% 89.0%
4929153 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.59 48.0 3.76e-01 88.6% 61.8%
4977961 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.59 49.0 3.97e-01 91.1% 87.7%
4947605 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.59 47.0 4.68e-01 89.9% 85.0%
3326172 2003.1.5.115 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.59 44.0 3.40e-01 92.4% 33.3%
4951097 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.59 49.0 3.89e-01 91.1% 79.4%
4029776 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.59 52.0 3.35e-01 97.5% 56.8%
4999609 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.58 49.0 3.35e-01 94.9% 53.9%
327528 328.1.1.2 a+b two layers › IF3-like › AlbA-like › AlbA-like › SpoVS 0.58 49.0 4.74e-01 94.9% 84.4%
4198253 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.58 47.0 3.63e-01 88.6% 61.7%
4934172 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.58 44.0 4.56e-01 91.1% 94.3%
5051703 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.58 46.0 3.23e-01 88.6% 78.9%
4927647 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.57 46.0 3.67e-01 88.6% 63.0%
3702328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 51.0 3.21e-01 100.0% 70.5%
4934117 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 44.0 4.36e-01 87.3% 81.2%
4946992 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.56 49.0 3.85e-01 100.0% 81.5%
5048329 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.55 45.0 3.77e-01 91.1% 84.1%
3396990 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.58e-01 93.7% 100.0%
5012702 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 45.0 4.09e-01 93.7% 73.9%
3784212 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 4.42e-01 100.0% 77.1%
5069807 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 47.0 3.76e-01 100.0% 78.3%
4980261 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.81e-01 82.3% 62.9%
5024785 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 47.0 4.26e-01 100.0% 100.0%
5043924 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.54 47.0 3.69e-01 98.7% 68.9%
4949226 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.54 39.0 3.14e-01 97.5% 37.5%
4996237 873.1.1.20 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF6125 0.54 47.0 4.04e-01 100.0% 93.3%
4979815 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.54 40.0 3.87e-01 87.3% 70.0%
4019332 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.54 46.0 4.47e-01 97.5% 95.6%
None 0.54 43.0 3.29e-01 91.1% 34.8%
5076792 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 47.0 3.80e-01 97.5% 81.8%
3593767 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.54 45.0 3.88e-01 94.9% 60.0%
5047798 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.53 43.0 3.55e-01 91.1% 85.2%
4978496 205.1.1.21 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 0.53 44.0 3.14e-01 92.4% 60.4%
5048004 873.1.1.13 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase 0.53 43.0 3.12e-01 93.7% 50.2%
4957772 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 45.0 3.61e-01 100.0% 75.3%
4946456 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.52 42.0 3.53e-01 91.1% 84.7%
3927328 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.52 45.0 4.09e-01 100.0% 71.4%
4999035 873.1.1.13 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase 0.52 44.0 3.50e-01 100.0% 71.7%
3187043 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 44.0 4.27e-01 97.5% 94.4%
5063099 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.51 44.0 3.53e-01 100.0% 82.4%
None 0.51 39.0 2.59e-01 87.3% 18.1%
5057183 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 42.0 4.06e-01 98.7% 86.3%
4967969 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.50 37.0 3.03e-01 92.4% 38.8%
4988662 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.50 42.0 3.72e-01 100.0% 96.9%
5040564 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.50 44.0 3.40e-01 100.0% 95.7%
D2 high residues 97-182
PDB
D3 medium residues 51-96_350-435
PDB
D4 medium residues 296-349
PDB