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SRR1747056_scaffold_0_curated_closed_gap_prodigal-single.1__X__X__00012
Bact-VirSRR1747056_scaffold_0_curated_closed_gap_prodigal-single.1__X__X__00012
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-194
Domain cluster:
rep: SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00125__D260-460
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.52 | 27.0 | 3.54e-01 | 79.1% | 89.9% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 25.0 | 3.46e-01 | 83.0% | 92.1% |
| 4fg9A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 23.0 | 3.20e-01 | 79.7% | 89.9% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.50 | 32.0 | 3.51e-01 | 82.4% | 77.2% |
| 4ao8A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 33.0 | 3.07e-01 | 72.5% | 51.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4499094 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.63 | 30.0 | 3.91e-01 | 73.6% | 79.0% |
| 4254174 | 4099.1.1.22 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P | 0.61 | 32.0 | 3.62e-01 | 70.9% | 63.4% |
| 3958436 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.57 | 28.0 | 2.83e-01 | 79.1% | 44.7% |
| 1710650 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.54 | 30.0 | 3.85e-01 | 81.3% | 95.1% |
| 3665649 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.50 | 26.0 | 3.15e-01 | 73.1% | 77.1% |
| 3170761 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.50 | 38.0 | 3.17e-01 | 79.7% | 45.1% |
D2
high
residues 262-343
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2n00A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.66 | 53.0 | 5.05e-01 | 87.8% | 88.4% |
| 1ac1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.64 | 45.0 | 3.47e-01 | 86.6% | 31.9% |
| 3l9vC00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 44.0 | 3.48e-01 | 85.4% | 33.7% |
| 4a2qA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 49.0 | 4.76e-01 | 87.8% | 100.0% |
| 3kluA01 | 3.30.2220.30 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › | 0.60 | 42.0 | 3.86e-01 | 100.0% | 54.5% |
| 2lwdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.59 | 48.0 | 4.63e-01 | 98.8% | 79.2% |
| 1v1gA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 49.0 | 3.81e-01 | 96.3% | 89.9% |
| 4uobA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.57 | 46.0 | 4.02e-01 | 89.0% | 98.4% |
| 1ichA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 46.0 | 4.56e-01 | 100.0% | 88.5% |
| 3s0aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.56 | 40.0 | 3.62e-01 | 76.8% | 71.4% |
| 2aaoB00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 47.0 | 4.02e-01 | 100.0% | 69.8% |
| 1xl7A01 | 1.10.275.20 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Choline/Carnitine o-acyltransferase | 0.54 | 40.0 | 3.77e-01 | 80.5% | 88.3% |
| 1lkvX02 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.53 | 43.0 | 3.76e-01 | 92.7% | 75.8% |
| 3pvuA01 | 1.10.287.1270 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 39.0 | 3.59e-01 | 95.1% | 62.2% |
| 8i3jA01 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.50 | 41.0 | 3.01e-01 | 92.7% | 53.8% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.50 | 31.0 | 2.91e-01 | 90.2% | 51.0% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.50 | 37.0 | 3.47e-01 | 81.7% | 88.2% |
| 4f3xA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.50 | 41.0 | 2.89e-01 | 92.7% | 51.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4517001 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.68 | 40.0 | 4.87e-01 | 75.6% | 96.0% |
| 3603198 | 7582.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 | 0.62 | 57.0 | 4.39e-01 | 100.0% | 67.4% |
| 4042821 | 4230.1.1.0 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain | 0.60 | 41.0 | 3.81e-01 | 80.5% | 55.2% |
| 4062597 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.60 | 51.0 | 3.83e-01 | 98.8% | 36.9% |
| 4636337 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.60 | 42.0 | 4.33e-01 | 73.2% | 86.7% |
| 3961645 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.57 | 40.0 | 4.18e-01 | 76.8% | 86.7% |
| 3413892 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.56 | 38.0 | 3.42e-01 | 72.0% | 58.3% |
| 4623967 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.55 | 40.0 | 3.12e-01 | 78.0% | 68.0% |
| 3719809 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.55 | 40.0 | 3.73e-01 | 81.7% | 62.0% |
| 3627298 | 108.1.1.30 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 | 0.53 | 46.0 | 3.66e-01 | 100.0% | 46.3% |
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.53 | 30.0 | 2.99e-01 | 91.5% | 54.1% |
| 3640543 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.52 | 40.0 | 2.55e-01 | 85.4% | 87.3% |
| 3363617 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.52 | 42.0 | 4.16e-01 | 87.8% | 83.5% |
| 3947726 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 37.0 | 2.91e-01 | 78.0% | 90.8% |