Back to structures

SRR1747057_scaffold_1_prodigal-single.1__X__X__00022

Bact-Vir

SRR1747057_scaffold_1_prodigal-single.1__X__X__00022

Identity

Kingdom:
phage

Quality

93.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-66
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 44.0 4.13e-01 71.9% 100.0%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 47.0 4.81e-01 93.0% 83.6%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.38e-01 100.0% 96.5%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.15e-01 96.5% 100.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.42e-01 100.0% 71.9%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 46.0 4.65e-01 100.0% 84.7%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 4.28e-01 86.0% 72.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 3.65e-01 100.0% 43.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.85e-01 100.0% 82.4%
4mtnA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 38.0 3.77e-01 70.2% 58.7%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 5.00e-01 100.0% 94.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.47e-01 100.0% 80.0%
3kd9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 3.51e-01 94.7% 50.9%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.27e-01 100.0% 57.1%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 5.00e-01 100.0% 93.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 4.83e-01 100.0% 89.7%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.39e-01 89.5% 75.0%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.76e-01 100.0% 84.6%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.96e-01 100.0% 100.0%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.98e-01 100.0% 98.2%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 50.0 4.47e-01 100.0% 77.4%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.82e-01 100.0% 93.2%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 49.0 4.53e-01 100.0% 93.4%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.58 42.0 3.66e-01 80.7% 91.6%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.76e-01 91.2% 77.5%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.29e-01 78.9% 84.0%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.73e-01 100.0% 100.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.57 42.0 3.47e-01 100.0% 41.6%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.68e-01 100.0% 100.0%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.78e-01 100.0% 98.2%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 48.0 4.70e-01 100.0% 93.7%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.56 48.0 3.34e-01 100.0% 30.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.56 47.0 4.70e-01 100.0% 95.0%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.60e-01 100.0% 93.7%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.50e-01 100.0% 100.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.77e-01 100.0% 82.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 4.42e-01 100.0% 91.7%
3aqlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 42.0 3.14e-01 84.2% 51.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.35e-01 100.0% 84.6%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 4.09e-01 87.7% 93.6%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.54 46.0 3.37e-01 100.0% 67.7%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.53 36.0 3.50e-01 96.5% 61.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.20e-01 100.0% 80.6%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.18e-01 100.0% 80.3%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.24e-01 100.0% 91.7%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 43.0 3.76e-01 100.0% 87.4%
2w9mB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 39.0 3.59e-01 86.0% 80.2%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.50e-01 98.2% 51.3%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 2.95e-01 86.0% 37.9%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4367301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.83e-01 100.0% 89.1%
4269668 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.67 57.0 5.79e-01 96.5% 100.0%
3501560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 4.83e-01 100.0% 68.9%
3925408 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.00e-01 100.0% 94.0%
5063433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.63e-01 98.2% 84.0%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 5.03e-01 100.0% 85.0%
4959077 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.18e-01 100.0% 100.0%
3821919 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.62 47.0 4.66e-01 100.0% 80.0%
137916 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.62 52.0 5.07e-01 98.2% 93.8%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.62 45.0 4.62e-01 100.0% 83.6%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.07e-01 100.0% 91.7%
3399557 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.00e-01 100.0% 81.4%
3625909 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 51.0 4.64e-01 100.0% 68.8%
3519861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.89e-01 100.0% 86.7%
2575643 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.60 46.0 4.39e-01 100.0% 71.0%
3929784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.86e-01 100.0% 100.0%
3554162 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 50.0 4.86e-01 100.0% 84.6%
1482194 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.59 45.0 4.47e-01 100.0% 80.0%
3899829 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 50.0 4.60e-01 100.0% 73.3%
3900208 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 50.0 4.91e-01 100.0% 87.5%
3903323 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 49.0 4.52e-01 100.0% 72.0%
3036710 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.58e-01 100.0% 81.0%
3755099 604.1.1.97 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.59 49.0 4.38e-01 100.0% 64.7%
3896701 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 49.0 4.31e-01 100.0% 61.1%
3737825 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 48.0 4.91e-01 96.5% 96.4%
4943876 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.59 50.0 4.28e-01 98.2% 68.4%
3933965 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 50.0 4.98e-01 100.0% 96.6%
3747208 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 48.0 4.42e-01 100.0% 68.8%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 49.0 4.76e-01 100.0% 84.6%
4610859 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 49.0 4.79e-01 100.0% 86.2%
3585447 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 48.0 4.42e-01 100.0% 68.8%
4973749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.47e-01 100.0% 74.3%
3542245 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 49.0 4.61e-01 100.0% 78.6%
3846069 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 49.0 4.80e-01 100.0% 86.2%
5001903 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.52e-01 100.0% 75.7%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 51.0 4.78e-01 100.0% 87.1%
4974211 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.58 46.0 4.61e-01 100.0% 86.7%
3270547 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 48.0 4.68e-01 100.0% 84.6%
3243949 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 49.0 4.89e-01 98.2% 93.3%
3267416 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 49.0 4.45e-01 100.0% 70.0%
3573775 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 49.0 4.76e-01 100.0% 86.2%
3561013 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 48.0 4.46e-01 100.0% 73.3%
3748846 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 48.0 4.68e-01 100.0% 84.6%
139950 4.1.1.126 beta barrels › SH3 › SH3 › SH3 › DUF5608 0.58 44.0 4.52e-01 100.0% 87.5%
3543889 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 48.0 2.93e-01 100.0% 13.3%
3623786 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 47.0 4.56e-01 100.0% 83.1%
3217113 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 47.0 4.53e-01 96.5% 81.5%
3567457 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 49.0 4.62e-01 100.0% 80.0%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 50.0 4.72e-01 100.0% 88.4%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 50.0 4.74e-01 100.0% 88.4%
4226934 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 50.0 4.83e-01 100.0% 93.8%
3886646 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 48.0 4.68e-01 100.0% 86.2%
3186993 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.11e-01 100.0% 62.9%
3885695 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 49.0 4.47e-01 100.0% 71.2%
3713613 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.75e-01 100.0% 90.8%
3269589 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 47.0 4.49e-01 100.0% 78.6%
3797970 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 49.0 4.26e-01 100.0% 64.4%
3926701 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 48.0 4.58e-01 100.0% 82.4%
4941512 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.14e-01 100.0% 71.4%
4020558 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.59e-01 100.0% 86.2%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 49.0 4.77e-01 100.0% 93.8%
3692073 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 47.0 4.46e-01 100.0% 80.0%
4969566 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.56 49.0 4.45e-01 100.0% 87.5%
3638884 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.24e-01 100.0% 65.6%
5009884 2003.1.5.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.56 36.0 2.37e-01 98.2% 14.3%
4069793 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 49.0 4.60e-01 100.0% 87.1%
5062211 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.56 47.0 3.32e-01 98.2% 59.0%
3517456 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.56 48.0 4.44e-01 100.0% 96.0%
3522910 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 47.0 4.39e-01 100.0% 76.0%
4084850 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 48.0 4.62e-01 100.0% 93.8%
3914833 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 47.0 4.44e-01 100.0% 81.4%
4429329 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 47.0 4.61e-01 100.0% 92.3%
4299932 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 48.0 4.63e-01 100.0% 92.3%
3599257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.56e-01 100.0% 87.7%
4214064 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 43.0 2.97e-01 87.7% 96.7%
1263519 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.55 45.0 4.46e-01 100.0% 85.5%
3482677 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.37e-01 100.0% 84.3%
3927663 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.50e-01 100.0% 92.3%
5045214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.47e-01 100.0% 85.7%
3480204 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 46.0 4.44e-01 100.0% 92.3%
4212091 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 45.0 4.40e-01 100.0% 87.7%
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.52 41.0 3.54e-01 100.0% 51.4%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.52 44.0 4.01e-01 100.0% 73.8%