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SRR1747057_scaffold_1_prodigal-single.1__X__X__00031
Bact-VirSRR1747057_scaffold_1_prodigal-single.1__X__X__00031
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-82
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.60 | 44.0 | 3.54e-01 | 81.5% | 87.6% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.59 | 30.0 | 3.32e-01 | 85.2% | 58.5% |
| 2gc9B00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 51.0 | 4.17e-01 | 100.0% | 91.9% |
| 4p79A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.58 | 43.0 | 3.33e-01 | 77.8% | 75.1% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 36.0 | 3.89e-01 | 88.9% | 81.4% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.54 | 42.0 | 3.49e-01 | 93.8% | 47.3% |
| 4z32C02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 38.0 | 3.65e-01 | 79.0% | 89.9% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.52 | 31.0 | 3.79e-01 | 81.5% | 96.0% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 46.0 | 2.98e-01 | 100.0% | 91.7% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.51 | 41.0 | 3.82e-01 | 86.4% | 71.8% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 38.0 | 4.08e-01 | 79.0% | 98.5% |
| 2pc1A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 44.0 | 3.50e-01 | 100.0% | 70.5% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 36.0 | 3.77e-01 | 81.5% | 85.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4970384 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.72 | 41.0 | 4.10e-01 | 85.2% | 55.3% |
| 5063466 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.68 | 40.0 | 3.86e-01 | 85.2% | 53.3% |
| 2631766 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.63 | 37.0 | 3.22e-01 | 87.7% | 37.3% |
| 3708219 | 331.23.1.4 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C | 0.62 | 39.0 | 4.11e-01 | 97.5% | 71.4% |
| 3196947 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 41.0 | 2.46e-01 | 70.4% | 9.8% |
| 5065809 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.60 | 39.0 | 3.11e-01 | 96.3% | 33.8% |
| 44680 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.59 | 44.0 | 4.20e-01 | 93.8% | 67.4% |
| 3804638 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 43.0 | 2.74e-01 | 77.8% | 70.3% |
| 5036616 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.58 | 36.0 | 3.87e-01 | 70.4% | 72.9% |
| 2162624 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.57 | 37.0 | 3.20e-01 | 92.6% | 42.1% |
| 5041767 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.57 | 42.0 | 3.86e-01 | 77.8% | 72.4% |
| 356532 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.57 | 42.0 | 3.08e-01 | 93.8% | 28.7% |
| 4583801 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.56 | 43.0 | 3.06e-01 | 93.8% | 27.3% |
| 3233720 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 42.0 | 2.87e-01 | 81.5% | 92.6% |
| 4209885 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.56 | 42.0 | 3.47e-01 | 93.8% | 44.0% |
| 3497478 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.55 | 49.0 | 3.65e-01 | 100.0% | 80.9% |
| 3489385 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 39.0 | 3.40e-01 | 100.0% | 48.0% |
| 3917386 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.55 | 43.0 | 3.38e-01 | 85.2% | 96.6% |
| 3953024 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 37.0 | 3.33e-01 | 95.1% | 49.6% |
| 3486330 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 31.0 | 3.68e-01 | 72.8% | 90.0% |
| 4877157 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.54 | 42.0 | 2.82e-01 | 93.8% | 21.8% |
| 3494647 | 4099.1.1.20 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 | 0.53 | 38.0 | 3.87e-01 | 98.8% | 77.5% |
| 3931904 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.52 | 31.0 | 3.55e-01 | 97.5% | 85.5% |
| 3626322 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 3.02e-01 | 100.0% | 90.6% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.52 | 29.0 | 3.82e-01 | 80.2% | 100.0% |
| 3783252 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 3.01e-01 | 100.0% | 94.8% |