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SRR1747057_scaffold_1_prodigal-single.1__X__X__00036
Bact-VirSRR1747057_scaffold_1_prodigal-single.1__X__X__00036
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 82-172
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 31.0 | 3.75e-01 | 89.0% | 81.1% |
| 4eaeA00 | 2.60.40.4170 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.46e-01 | 91.2% | 93.5% |
| 4gw9A02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 35.0 | 3.57e-01 | 100.0% | 72.8% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 35.0 | 2.97e-01 | 74.7% | 91.8% |
D2
medium
residues 1-77
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 48.0 | 5.39e-01 | 75.3% | 93.4% |
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.67 | 48.0 | 4.91e-01 | 93.5% | 77.3% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.66 | 52.0 | 4.10e-01 | 94.8% | 42.2% |
| 1zoyD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.63 | 51.0 | 4.60e-01 | 87.0% | 65.7% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 41.0 | 4.73e-01 | 74.0% | 96.3% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 41.0 | 4.15e-01 | 92.2% | 70.7% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 45.0 | 4.33e-01 | 96.1% | 69.8% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.58 | 42.0 | 4.25e-01 | 79.2% | 75.6% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 42.0 | 3.81e-01 | 76.6% | 67.6% |
| 3i5xA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 51.0 | 3.53e-01 | 100.0% | 74.6% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.57 | 38.0 | 4.15e-01 | 90.9% | 85.5% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 37.0 | 3.74e-01 | 90.9% | 65.0% |
| 1k90B03 | 1.20.140.60 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.56 | 44.0 | 3.93e-01 | 88.3% | 59.1% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.55 | 40.0 | 4.06e-01 | 75.3% | 95.9% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.54 | 39.0 | 3.95e-01 | 79.2% | 76.6% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.54 | 39.0 | 4.10e-01 | 83.1% | 84.5% |
| 2x6hA03 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.54 | 43.0 | 3.24e-01 | 88.3% | 89.0% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.54 | 39.0 | 3.92e-01 | 80.5% | 77.6% |
| 2ckzA01 | 6.10.140.870 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 33.0 | 3.94e-01 | 90.9% | 100.0% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 3.79e-01 | 72.7% | 78.9% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 35.0 | 3.81e-01 | 92.2% | 85.7% |
| 1l8nA03 | 3.90.1330.10 | Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain | 0.51 | 43.0 | 3.26e-01 | 96.1% | 79.5% |
| 2qe7G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.51 | 38.0 | 3.55e-01 | 79.2% | 67.0% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 41.0 | 2.75e-01 | 87.0% | 33.6% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.51 | 37.0 | 3.83e-01 | 77.9% | 84.7% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 42.0 | 3.15e-01 | 97.4% | 56.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3199170 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.71 | 50.0 | 3.89e-01 | 74.0% | 37.0% |
| 3282465 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.58 | 45.0 | 4.25e-01 | 83.1% | 77.9% |
| 4026623 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.57 | 41.0 | 2.99e-01 | 74.0% | 27.8% |
| 3248157 | 109.4.1.166 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3535 | 0.56 | 50.0 | 2.98e-01 | 98.7% | 14.2% |
| 3469793 | 375.10.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol | 0.56 | 42.0 | 3.63e-01 | 80.5% | 85.8% |
| 3657338 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.55 | 42.0 | 4.12e-01 | 87.0% | 74.1% |
| 3500503 | 192.8.1.300 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › SOAR | 0.55 | 41.0 | 3.55e-01 | 77.9% | 84.3% |
| 3544536 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 39.0 | 3.54e-01 | 93.5% | 54.3% |
| 3172733 | 630.1.1.4 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF28952 | 0.54 | 47.0 | 3.93e-01 | 100.0% | 89.3% |
| 4015450 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.54 | 42.0 | 4.40e-01 | 87.0% | 100.0% |
| 3688361 | 604.12.1.88 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF28329 | 0.53 | 48.0 | 3.78e-01 | 98.7% | 60.6% |
| 3959985 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.53 | 42.0 | 3.46e-01 | 88.3% | 89.0% |
| 3356899 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 43.0 | 3.20e-01 | 94.8% | 47.5% |
| 3438255 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.50 | 41.0 | 4.21e-01 | 94.8% | 98.7% |