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SRR1747057_scaffold_1_prodigal-single.1__X__X__00094

Bact-Vir

SRR1747057_scaffold_1_prodigal-single.1__X__X__00094

Identity

Kingdom:
phage

Quality

72.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 380-501
PDB
Domain cluster: rep: SRR1747055_scaffold_2_prodigal-single.1__X__X__00342__D202-325
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.82 78.0 7.79e-01 100.0% 98.4%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.66 49.0 5.57e-01 86.9% 100.0%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.66 47.0 5.32e-01 86.9% 95.8%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 29.0 3.37e-01 91.8% 67.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937267 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.88 83.0 8.41e-01 99.2% 99.2%
5033307 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.85 82.0 7.80e-01 100.0% 95.0%
364260 70.4.1.3 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 0.81 78.0 6.92e-01 100.0% 98.8%
5083719 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.68 63.0 6.33e-01 99.2% 98.4%
5083816 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.67 38.0 5.01e-01 99.2% 98.6%
5022524 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.65 35.0 4.37e-01 98.4% 88.6%
2808420 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.65 47.0 4.97e-01 86.9% 83.5%
2526359 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.64 32.0 4.44e-01 100.0% 98.3%
4983299 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.53 33.0 3.83e-01 100.0% 88.2%
4990371 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.53 31.0 3.96e-01 84.4% 100.0%
3603211 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.53 32.0 3.84e-01 100.0% 92.5%
5080901 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 26.0 3.10e-01 74.6% 70.0%
4956897 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.52 32.0 3.89e-01 100.0% 95.0%
3268226 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.51 30.0 3.20e-01 91.8% 66.7%
4642375 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 29.0 3.24e-01 89.3% 71.6%