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SRR1747057_scaffold_1_prodigal-single.1__X__X__00106
Bact-VirSRR1747057_scaffold_1_prodigal-single.1__X__X__00106
Identity
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 236-332
Domain cluster:
rep: IMGVR_UViG_3300020438_002319-3300020438-Ga0211576_100156551__D18-85
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08708.17 best | PriCT_1 | 37.6 | 1.80e-09 | 71.1% | 95.5% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.72 | 53.0 | 5.57e-01 | 77.3% | 85.4% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.61 | 50.0 | 4.94e-01 | 89.7% | 87.1% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 43.0 | 4.11e-01 | 74.2% | 71.7% |
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.60 | 50.0 | 4.88e-01 | 90.7% | 92.4% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 47.0 | 3.51e-01 | 89.7% | 61.7% |
| 5gmkZ01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 47.0 | 3.68e-01 | 89.7% | 74.1% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.59 | 46.0 | 3.91e-01 | 85.6% | 90.2% |
| 7csoA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.58 | 47.0 | 3.64e-01 | 88.7% | 69.5% |
| 2j1oA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 47.0 | 3.54e-01 | 90.7% | 83.5% |
| 1h97A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 41.0 | 3.58e-01 | 76.3% | 70.7% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.56 | 40.0 | 3.61e-01 | 75.3% | 86.5% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 40.0 | 3.91e-01 | 77.3% | 88.4% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 44.0 | 3.40e-01 | 86.6% | 72.4% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.55 | 39.0 | 3.94e-01 | 74.2% | 86.6% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 39.0 | 3.64e-01 | 74.2% | 71.1% |
| 5my3A00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.54 | 43.0 | 3.48e-01 | 88.7% | 84.0% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 39.0 | 3.60e-01 | 74.2% | 71.1% |
| 1u6zA03 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 44.0 | 3.87e-01 | 89.7% | 80.8% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 39.0 | 3.87e-01 | 97.9% | 72.5% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.54 | 42.0 | 4.53e-01 | 89.7% | 100.0% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 37.0 | 2.81e-01 | 72.2% | 99.2% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 37.0 | 3.47e-01 | 74.2% | 69.9% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.53 | 37.0 | 3.65e-01 | 73.2% | 92.4% |
| 4c0nA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 39.0 | 3.46e-01 | 80.4% | 62.7% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 40.0 | 3.47e-01 | 80.4% | 65.3% |
| 4iluA02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.52 | 41.0 | 3.99e-01 | 86.6% | 75.7% |
| 1hu3A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 40.0 | 3.26e-01 | 84.5% | 67.6% |
| 4w9rA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 35.0 | 3.59e-01 | 79.4% | 72.3% |
| 1u8xX02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.52 | 37.0 | 2.74e-01 | 75.3% | 34.8% |
| 2hr2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 41.0 | 3.55e-01 | 88.7% | 77.6% |
| 3vfcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 40.0 | 3.47e-01 | 84.5% | 89.3% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081313 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.88 | 72.0 | 7.45e-01 | 87.6% | 91.1% |
| 5064030 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.79 | 67.0 | 6.76e-01 | 90.7% | 92.6% |
| 2138992 | 182.1.3.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › PriX | 0.73 | 64.0 | 6.23e-01 | 100.0% | 86.9% |
| 4435347 | 6035.1.1.2 ↗ | alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain › RepB_primase_C | 0.71 | 55.0 | 5.49e-01 | 81.4% | 86.0% |
| 3711112 | 4198.1.1.0 ↗ | alpha arrays › TerB-like › TerB-like › TerB-like | 0.71 | 54.0 | 4.71e-01 | 80.4% | 75.2% |
| 3271098 | 182.1.2.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › DNA_primase_lrg | 0.70 | 62.0 | 4.82e-01 | 95.9% | 58.5% |
| 3782526 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 50.0 | 5.18e-01 | 79.4% | 94.4% |
| 4955397 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.64 | 45.0 | 3.92e-01 | 88.7% | 48.3% |
| 3337098 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 47.0 | 4.76e-01 | 78.4% | 98.9% |
| 4392375 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.63 | 44.0 | 4.26e-01 | 72.2% | 81.8% |
| 3920786 | 109.3.1.204 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Death_MADD | 0.63 | 56.0 | 4.19e-01 | 100.0% | 68.6% |
| 3497896 | 109.3.1.204 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Death_MADD | 0.62 | 55.0 | 4.08e-01 | 100.0% | 70.8% |
| 3243858 | 6140.1.1.3 ↗ | alpha superhelices › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Treslin_STD | 0.61 | 49.0 | 3.98e-01 | 88.7% | 53.2% |
| 3476020 | 109.4.1.1469 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Death_MADD | 0.60 | 53.0 | 4.06e-01 | 100.0% | 67.0% |
| 3737247 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 45.0 | 3.52e-01 | 83.5% | 60.5% |
| 3757706 | 198.1.1.7 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA | 0.58 | 41.0 | 3.98e-01 | 74.2% | 72.7% |
| 3877309 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.58 | 41.0 | 4.26e-01 | 74.2% | 88.9% |
| 3960314 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.58 | 46.0 | 4.39e-01 | 88.7% | 77.4% |
| 3600794 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.57 | 42.0 | 4.25e-01 | 76.3% | 95.8% |
| 3680364 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.56 | 43.0 | 3.58e-01 | 82.5% | 62.3% |
| 4938165 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.56 | 42.0 | 4.41e-01 | 80.4% | 87.8% |
| 3867614 | 220.1.1.34 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 | 0.56 | 42.0 | 2.67e-01 | 80.4% | 36.6% |
| 4946446 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.55 | 44.0 | 3.78e-01 | 88.7% | 69.7% |
| 143247 | 592.2.1.1 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 | 0.55 | 43.0 | 4.62e-01 | 86.6% | 98.8% |
| 2875228 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.55 | 38.0 | 3.77e-01 | 72.2% | 81.4% |
| 3619832 | 109.4.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3Ka | 0.54 | 42.0 | 3.39e-01 | 86.6% | 71.9% |
| 4520559 | 592.2.1.1 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 | 0.54 | 43.0 | 4.52e-01 | 86.6% | 97.6% |
| 2420107 | 532.1.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Antibiotic binding domain of TipA-like multidrug resistance regulators › Antibiotic binding domain of TipA-like multidrug resistance regulators › TipAS | 0.54 | 38.0 | 3.76e-01 | 76.3% | 87.0% |
| 3760145 | 106.1.1.8 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like | 0.53 | 40.0 | 3.47e-01 | 79.4% | 63.3% |
| 3682600 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.52 | 42.0 | 3.35e-01 | 89.7% | 59.1% |
| 3680700 | 109.4.1.1127 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_Cnot1 | 0.51 | 40.0 | 3.26e-01 | 86.6% | 62.0% |
| 3370463 | 5069.1.1.49 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › TIC20 | 0.51 | 34.0 | 3.22e-01 | 70.1% | 80.0% |
| 3810077 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.50 | 38.0 | 3.30e-01 | 79.4% | 75.5% |
| 3805763 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.50 | 38.0 | 3.25e-01 | 79.4% | 57.3% |
D2
medium
residues 1-57
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pjqB05 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.69 | 54.0 | 4.15e-01 | 87.7% | 38.9% |
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.62 | 51.0 | 3.23e-01 | 100.0% | 19.1% |
| 1va0B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.59 | 46.0 | 3.65e-01 | 89.5% | 40.3% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 43.0 | 3.97e-01 | 82.5% | 70.9% |
| 1s4dE02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 47.0 | 3.61e-01 | 93.0% | 87.1% |
| 1x5aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 43.0 | 3.84e-01 | 100.0% | 54.9% |
| 2pjyC00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.57 | 39.0 | 3.58e-01 | 71.9% | 69.6% |
| 5exvC00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.57 | 48.0 | 3.54e-01 | 98.2% | 58.2% |
| 3e8vA00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.56 | 43.0 | 3.85e-01 | 98.2% | 58.5% |
| 3lqmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 4.00e-01 | 100.0% | 60.0% |
| 3fm2A00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.56 | 47.0 | 3.66e-01 | 98.2% | 77.4% |
| 3u5wA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 47.0 | 3.71e-01 | 98.2% | 50.8% |
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 44.0 | 3.49e-01 | 96.5% | 40.5% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 47.0 | 3.27e-01 | 96.5% | 92.2% |
| 2vtfA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 3.87e-01 | 100.0% | 60.4% |
| 6orhA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 42.0 | 3.44e-01 | 98.2% | 43.6% |
| 2hq9B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 45.0 | 3.50e-01 | 98.2% | 46.0% |
| 2xtlA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.53 | 42.0 | 3.65e-01 | 100.0% | 54.5% |
| 2drvA00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.52 | 45.0 | 3.18e-01 | 100.0% | 73.3% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.52 | 42.0 | 3.46e-01 | 93.0% | 71.4% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 41.0 | 3.25e-01 | 96.5% | 38.7% |
| 3gzaB02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 40.0 | 3.49e-01 | 98.2% | 52.0% |
| 1w99A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 42.0 | 3.08e-01 | 100.0% | 40.8% |
| 2dmhA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 42.0 | 3.34e-01 | 100.0% | 47.1% |
| 2g2nC00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.51 | 43.0 | 3.54e-01 | 98.2% | 75.0% |
| 4uapA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 42.0 | 3.24e-01 | 98.2% | 38.0% |
| 4zrxA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 38.0 | 3.31e-01 | 98.2% | 48.6% |
| 4lhsA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 42.0 | 3.21e-01 | 100.0% | 40.9% |
| 4icwA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 41.0 | 3.31e-01 | 98.2% | 73.8% |
| 3ddcB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 39.0 | 3.25e-01 | 100.0% | 86.5% |
| 2cdoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 40.0 | 3.22e-01 | 98.2% | 47.8% |
| 1vq8B03 | 3.30.1430.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › | 0.50 | 40.0 | 3.44e-01 | 100.0% | 79.3% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3489385 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 59.0 | 4.61e-01 | 91.2% | 74.4% |
| 4045489 | 11.1.1.132 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YscW | 0.57 | 48.0 | 4.05e-01 | 100.0% | 74.3% |
| 5055064 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 40.0 | 4.04e-01 | 96.5% | 73.3% |
| 3531882 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.57 | 41.0 | 3.40e-01 | 80.7% | 68.7% |
| 3243572 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 44.0 | 3.49e-01 | 96.5% | 61.4% |
| 3222377 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.56 | 43.0 | 3.26e-01 | 91.2% | 61.9% |
| 5070388 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 45.0 | 3.55e-01 | 100.0% | 45.5% |
| 5009352 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 42.0 | 3.78e-01 | 98.2% | 57.6% |
| 3521963 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.55 | 45.0 | 3.68e-01 | 93.0% | 72.7% |
| 4941520 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.98e-01 | 100.0% | 61.1% |
| 3582195 | 12.3.1.18 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N | 0.55 | 45.0 | 3.06e-01 | 100.0% | 69.8% |
| 4999320 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 43.0 | 3.78e-01 | 100.0% | 57.8% |
| 4940278 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 45.0 | 3.37e-01 | 100.0% | 43.6% |
| 4941023 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 40.0 | 3.61e-01 | 98.2% | 56.5% |
| 3620574 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.53 | 45.0 | 3.33e-01 | 98.2% | 48.1% |
| 4015909 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.53 | 42.0 | 3.34e-01 | 98.2% | 39.3% |
| 3389202 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.53 | 44.0 | 3.31e-01 | 96.5% | 68.0% |
| 3739999 | 11.1.1.646 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N | 0.53 | 43.0 | 3.36e-01 | 100.0% | 62.0% |
| 3704438 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.53 | 40.0 | 2.99e-01 | 98.2% | 30.6% |
| 4127135 | 10.32.1.12 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 | 0.53 | 44.0 | 3.35e-01 | 100.0% | 39.4% |
| 5027267 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.53 | 43.0 | 3.31e-01 | 98.2% | 42.0% |
| 3935529 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.52 | 45.0 | 3.32e-01 | 100.0% | 39.4% |
| 5052821 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.69e-01 | 100.0% | 59.0% |
| 315942 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.51 | 39.0 | 3.05e-01 | 89.5% | 43.2% |
| 3246513 | 11.1.4.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Transthyretin | 0.51 | 42.0 | 3.49e-01 | 98.2% | 73.0% |
| 1692065 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 42.0 | 3.24e-01 | 98.2% | 38.0% |
| 3918283 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.51 | 43.0 | 3.58e-01 | 100.0% | 63.6% |
| 5079405 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.57e-01 | 100.0% | 59.0% |
| 3879336 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.51 | 40.0 | 3.53e-01 | 100.0% | 57.8% |
| 3252287 | 11.1.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 | 0.51 | 43.0 | 3.43e-01 | 100.0% | 56.8% |
| 5006279 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 40.0 | 3.36e-01 | 98.2% | 48.6% |
| 4969611 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 34.0 | 2.34e-01 | 71.9% | 35.3% |
| 3820477 | 11.1.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 | 0.51 | 41.0 | 3.27e-01 | 100.0% | 57.9% |
| 3630404 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.50 | 38.0 | 2.96e-01 | 87.7% | 46.0% |
| 3613397 | 10.2.1.55 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL | 0.50 | 35.0 | 3.08e-01 | 75.4% | 52.6% |
| 3742084 | 220.1.1.67 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 | 0.50 | 42.0 | 3.13e-01 | 98.2% | 50.3% |
| 3439681 | 10.2.1.55 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL | 0.50 | 37.0 | 3.22e-01 | 98.2% | 49.5% |
| 3392050 | 10.32.1.103 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5918 | 0.50 | 42.0 | 2.98e-01 | 98.2% | 42.6% |
D3
medium
residues 58-233
Domain cluster:
rep: MN234206.1__QFG12290.1__PBI_RACECAR_277__00246__D97-238
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.76 | 64.0 | 4.88e-01 | 87.5% | 71.9% |
| 1g71A01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.75 | 54.0 | 4.83e-01 | 81.8% | 54.7% |
| 2faoA01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.75 | 68.0 | 5.65e-01 | 94.3% | 61.3% |
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.74 | 59.0 | 4.72e-01 | 81.8% | 57.1% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.73 | 62.0 | 4.68e-01 | 88.6% | 75.1% |
| 3jtnB00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 36.0 | 4.85e-01 | 73.9% | 100.0% |
| 2y1rK00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 35.0 | 4.56e-01 | 75.0% | 100.0% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.59 | 47.0 | 4.56e-01 | 83.5% | 94.8% |
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.55 | 45.0 | 4.08e-01 | 87.5% | 91.3% |
| 3s6xC03 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.54 | 15.0 | 2.79e-01 | 79.5% | 92.5% |
| 4pvkA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.54 | 38.0 | 3.82e-01 | 89.8% | 70.6% |
| 3gqcC01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 38.0 | 4.28e-01 | 86.4% | 94.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081312 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.91 | 79.0 | 7.18e-01 | 97.2% | 70.9% |
| 5027616 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.82 | 61.0 | 5.20e-01 | 81.2% | 50.8% |
| 4212379 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.81 | 64.0 | 5.56e-01 | 81.8% | 63.1% |
| 5069642 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.80 | 59.0 | 5.41e-01 | 81.2% | 60.0% |
| 4962169 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.80 | 56.0 | 5.07e-01 | 81.8% | 54.3% |
| 5044094 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 61.0 | 5.52e-01 | 81.8% | 60.4% |
| 4937156 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.79 | 76.0 | 6.33e-01 | 100.0% | 67.9% |
| 4426711 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 60.0 | 5.19e-01 | 81.8% | 53.7% |
| 4946939 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 60.0 | 5.71e-01 | 81.2% | 68.5% |
| 5004945 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.79 | 59.0 | 5.15e-01 | 81.2% | 53.3% |
| 4955551 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.78 | 69.0 | 6.11e-01 | 96.6% | 66.5% |
| 5045979 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.78 | 61.0 | 5.14e-01 | 81.8% | 51.9% |
| 4973338 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.78 | 62.0 | 5.11e-01 | 81.2% | 66.0% |
| 4552974 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.78 | 62.0 | 5.48e-01 | 81.8% | 64.6% |
| 5030283 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.78 | 74.0 | 6.24e-01 | 100.0% | 67.3% |
| 5051647 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.78 | 61.0 | 5.43e-01 | 81.2% | 60.4% |
| 5060983 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 61.0 | 5.10e-01 | 81.8% | 64.2% |
| 5019731 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 61.0 | 4.86e-01 | 81.2% | 71.6% |
| 4442634 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 61.0 | 5.05e-01 | 81.8% | 70.0% |
| 4998612 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 60.0 | 5.29e-01 | 81.2% | 58.3% |
| 4994656 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 61.0 | 5.25e-01 | 81.8% | 63.5% |
| 4978273 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 61.0 | 5.18e-01 | 81.2% | 65.7% |
| 4425840 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 61.0 | 4.86e-01 | 81.8% | 72.2% |
| 4956744 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 61.0 | 5.27e-01 | 81.8% | 66.7% |
| 5023651 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.76 | 61.0 | 5.08e-01 | 83.0% | 61.0% |
| 5000686 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 60.0 | 4.99e-01 | 81.2% | 64.9% |
| 4650634 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 58.0 | 5.05e-01 | 81.8% | 55.2% |
| 4985674 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.75 | 68.0 | 5.68e-01 | 93.8% | 67.4% |
| 5059790 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.75 | 71.0 | 5.26e-01 | 100.0% | 81.0% |
| 4274062 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.75 | 58.0 | 5.10e-01 | 81.8% | 56.8% |
| 5065288 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.74 | 59.0 | 4.96e-01 | 81.8% | 53.5% |
| 4197700 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.74 | 59.0 | 4.94e-01 | 81.8% | 66.2% |
| 5010675 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.73 | 58.0 | 4.99e-01 | 81.8% | 67.3% |
| None | — | 0.73 | 69.0 | 5.59e-01 | 100.0% | 56.8% | |
| 3701221 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.66 | 38.0 | 4.75e-01 | 81.8% | 94.3% |
| 3210994 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.56 | 36.0 | 4.17e-01 | 86.4% | 92.5% |
| 3596046 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.56 | 32.0 | 4.01e-01 | 73.9% | 100.0% |
| 3710036 | 878.1.1.3 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › FAZ1_cons | 0.55 | 31.0 | 3.98e-01 | 73.9% | 100.0% |
| 4291714 | 304.55.2.7 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › tRNA_synt_2f | 0.55 | 42.0 | 3.88e-01 | 80.7% | 96.5% |
| 3925806 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.54 | 35.0 | 4.12e-01 | 85.8% | 94.2% |
| 3703418 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 35.0 | 3.94e-01 | 85.8% | 85.0% |