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SRR1747057_scaffold_1_prodigal-single.1__X__X__00134

Bact-Vir

SRR1747057_scaffold_1_prodigal-single.1__X__X__00134

Identity

Kingdom:
phage

Quality

93.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 243-371
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14579.13 best HHH_6 41.2 2.10e-10 66.7% 88.9%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2an1D01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.52 34.0 3.38e-01 93.0% 63.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2132559 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.78 56.0 5.68e-01 73.6% 78.9%
4208827 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.76 70.0 6.06e-01 97.7% 87.4%
4319349 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.75 71.0 6.30e-01 99.2% 84.0%
4662943 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.75 71.0 6.44e-01 100.0% 81.8%
4061607 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.75 71.0 6.19e-01 100.0% 84.3%
3987438 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.75 48.0 4.56e-01 72.1% 54.2%
3589922 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.74 70.0 6.30e-01 100.0% 85.3%
3963903 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.74 69.0 6.12e-01 100.0% 84.4%
4073066 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.74 69.0 6.18e-01 100.0% 83.4%
4641808 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.74 69.0 6.04e-01 100.0% 84.3%
3969044 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.73 68.0 5.82e-01 100.0% 85.5%
4116376 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.73 69.0 6.35e-01 100.0% 82.5%
3989404 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.73 68.0 6.31e-01 100.0% 84.4%
4356978 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.72 68.0 5.98e-01 100.0% 85.0%
3959918 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.72 67.0 5.45e-01 100.0% 67.4%
4452667 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.71 67.0 6.03e-01 100.0% 82.4%
4288348 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.71 66.0 5.77e-01 100.0% 83.2%
None 0.71 66.0 5.79e-01 100.0% 84.9%
3969369 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.70 66.0 5.96e-01 100.0% 82.4%
3839743 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.70 66.0 5.65e-01 100.0% 84.6%
4162931 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.70 65.0 5.90e-01 100.0% 84.7%
4387225 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.70 65.0 5.84e-01 100.0% 82.3%
4145212 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.66 58.0 5.51e-01 95.3% 81.3%
D2 high residues 375-464
PDB
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.89 71.0 7.44e-01 87.8% 90.2%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.87 70.0 6.81e-01 84.4% 85.6%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.85 69.0 6.49e-01 85.6% 99.0%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.84 68.0 6.37e-01 85.6% 80.7%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.84 68.0 6.92e-01 85.6% 94.4%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.84 68.0 6.55e-01 85.6% 92.0%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.84 75.0 7.06e-01 95.6% 100.0%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.84 74.0 6.77e-01 94.4% 86.8%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.83 69.0 6.36e-01 86.7% 74.5%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.83 65.0 6.97e-01 82.2% 94.8%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.83 74.0 7.26e-01 95.6% 96.9%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.83 74.0 7.14e-01 95.6% 90.1%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.82 72.0 6.85e-01 94.4% 94.2%
6lbrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 73.0 5.52e-01 95.6% 66.0%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 63.0 6.23e-01 82.2% 82.3%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 72.0 6.74e-01 95.6% 83.5%
1eovA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 72.0 6.23e-01 95.6% 77.6%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 72.0 6.57e-01 96.7% 92.2%
3m4pA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 72.0 6.64e-01 95.6% 86.6%
3amuA02 2.40.50.1010 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.80 69.0 5.96e-01 95.6% 61.8%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 71.0 6.26e-01 95.6% 96.1%
2kbnA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 70.0 6.52e-01 94.4% 81.7%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 70.0 6.84e-01 95.6% 91.8%
4owwB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 69.0 6.51e-01 94.4% 84.1%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.78 62.0 6.42e-01 83.3% 90.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 41.0 4.90e-01 81.1% 74.6%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.78 53.0 4.85e-01 82.2% 54.9%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.78 66.0 6.53e-01 95.6% 87.1%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 69.0 5.86e-01 95.6% 73.6%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 69.0 6.90e-01 95.6% 95.6%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 67.0 6.47e-01 95.6% 88.2%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.76 50.0 5.69e-01 72.2% 89.6%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.76 56.0 6.15e-01 82.2% 94.6%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 51.0 5.77e-01 83.3% 98.4%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 66.0 6.56e-01 96.7% 96.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 40.0 4.74e-01 82.2% 77.8%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 56.0 6.07e-01 90.0% 97.3%
2e8gA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 55.0 5.03e-01 83.3% 65.5%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 36.0 4.45e-01 78.9% 85.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.51e-01 91.1% 76.4%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 50.0 5.50e-01 80.0% 98.6%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 51.0 5.51e-01 84.4% 98.7%
2ytyA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 47.0 4.80e-01 83.3% 77.3%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 39.0 4.50e-01 82.2% 95.1%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 4.43e-01 83.3% 79.3%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.60 45.0 3.90e-01 80.0% 80.9%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 43.0 2.86e-01 75.6% 87.7%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 36.0 4.28e-01 98.9% 100.0%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 47.0 4.11e-01 91.1% 99.3%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 4.45e-01 81.1% 98.7%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 40.0 2.81e-01 75.6% 35.6%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.59e-01 78.9% 70.5%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.54 44.0 3.02e-01 86.7% 56.9%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 35.0 3.84e-01 83.3% 82.9%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 38.0 3.43e-01 73.3% 68.5%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 40.0 2.92e-01 82.2% 81.5%
3u2aA00 3.30.450.310 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 32.0 3.06e-01 100.0% 49.1%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.50e-01 90.0% 51.0%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 43.0 3.88e-01 92.2% 89.8%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.51 37.0 3.25e-01 88.9% 50.4%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 42.0 3.04e-01 90.0% 54.6%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 42.0 2.84e-01 92.2% 24.6%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959920 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.92 88.0 7.94e-01 100.0% 93.9%
4099166 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.91 85.0 7.87e-01 97.8% 95.5%
4087511 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.91 86.0 7.98e-01 100.0% 96.4%
4528707 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.91 86.0 7.97e-01 100.0% 96.4%
4369732 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.91 86.0 7.96e-01 100.0% 97.3%
3282699 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.91 86.0 7.82e-01 100.0% 89.6%
4298544 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.90 84.0 7.38e-01 97.8% 83.2%
4145173 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.90 84.0 7.90e-01 97.8% 96.2%
4238204 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.90 84.0 7.88e-01 97.8% 96.2%
381 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.89 71.0 7.62e-01 87.8% 94.9%
3590786 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.89 84.0 7.78e-01 100.0% 95.5%
4278743 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.89 84.0 7.75e-01 100.0% 92.7%
4479389 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.89 83.0 7.58e-01 100.0% 93.9%
3314558 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.88 79.0 6.59e-01 95.6% 71.5%
4672300 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.87 80.0 7.55e-01 96.7% 100.0%
4288723 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.87 68.0 7.41e-01 84.4% 97.3%
4538990 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.87 66.0 7.20e-01 83.3% 94.7%
1890287 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.87 70.0 6.81e-01 84.4% 85.6%
4102465 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.86 80.0 7.58e-01 100.0% 97.1%
4305633 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.86 68.0 7.18e-01 90.0% 92.5%
4071867 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.85 80.0 7.05e-01 100.0% 94.4%
3384331 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.85 74.0 7.66e-01 92.2% 100.0%
4032678 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.85 75.0 7.26e-01 94.4% 88.0%
4032340 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.85 80.0 7.51e-01 100.0% 94.3%
3963927 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.85 79.0 7.34e-01 100.0% 93.6%
4552570 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.84 77.0 7.11e-01 96.7% 85.5%
4096168 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.84 66.0 7.04e-01 83.3% 92.5%
4934694 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.84 74.0 7.02e-01 94.4% 89.5%
4126896 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.84 76.0 6.44e-01 96.7% 67.1%
5012544 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 74.0 7.04e-01 95.6% 94.3%
4308192 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.83 75.0 6.12e-01 95.6% 60.0%
4182108 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.83 78.0 7.11e-01 100.0% 99.1%
5078989 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.83 74.0 6.40e-01 95.6% 81.5%
4045594 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 64.0 7.00e-01 81.1% 96.0%
3990098 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.83 76.0 7.02e-01 96.7% 80.9%
4141727 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.83 75.0 7.05e-01 95.6% 89.5%
4188650 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.83 76.0 7.14e-01 96.7% 89.5%
3589788 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 73.0 7.05e-01 94.4% 86.0%
4477850 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.83 74.0 7.13e-01 95.6% 94.0%
5041945 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 74.0 7.01e-01 95.6% 88.6%
4193351 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.82 77.0 7.13e-01 100.0% 95.5%
4547854 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 75.0 6.95e-01 96.7% 90.0%
4107771 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.82 77.0 6.88e-01 100.0% 87.5%
4642580 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 74.0 6.98e-01 95.6% 84.8%
4680169 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.82 74.0 6.97e-01 95.6% 84.8%
4250120 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.82 76.0 6.90e-01 98.9% 87.8%
4443438 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.82 76.0 6.97e-01 100.0% 88.7%
3602923 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 74.0 7.07e-01 94.4% 86.0%
3387410 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 76.0 6.93e-01 100.0% 94.8%
3969368 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 76.0 7.05e-01 100.0% 94.5%
5055765 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 76.0 6.95e-01 100.0% 92.2%
5076884 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 73.0 6.10e-01 95.6% 69.7%
5004339 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 73.0 5.80e-01 95.6% 71.4%
4128017 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 73.0 6.30e-01 96.7% 68.9%
4934074 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 76.0 7.05e-01 100.0% 93.6%
185233 2.1.1.61 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-like 0.81 72.0 6.54e-01 96.7% 89.9%
4033491 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 72.0 6.81e-01 95.6% 81.9%
4975883 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 71.0 6.14e-01 94.4% 84.4%
4259684 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.81 75.0 6.97e-01 100.0% 93.6%
5069515 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.80 75.0 6.85e-01 100.0% 89.6%
4943495 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 75.0 6.93e-01 100.0% 96.4%
5076251 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 75.0 6.93e-01 100.0% 95.5%
5028042 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 75.0 6.73e-01 100.0% 88.3%
4078426 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.80 72.0 6.43e-01 95.6% 79.2%
4091743 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 69.0 6.04e-01 95.6% 63.8%
4982874 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 72.0 6.34e-01 95.6% 90.4%
5042629 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.80 71.0 6.82e-01 94.4% 99.0%
5082388 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 75.0 6.42e-01 100.0% 80.0%
3905134 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 71.0 6.70e-01 95.6% 97.1%
185055 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 69.0 5.56e-01 95.6% 50.3%
4955341 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 71.0 6.73e-01 95.6% 88.6%
4953995 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 75.0 6.67e-01 100.0% 86.7%
5057110 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.79 70.0 6.45e-01 95.6% 81.7%
4028808 2.1.1.142 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HROB 0.79 73.0 5.96e-01 100.0% 85.6%
5033640 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.79 70.0 6.50e-01 95.6% 90.0%
5039973 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 69.0 6.57e-01 94.4% 89.5%
5038519 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.79 73.0 6.71e-01 100.0% 94.8%
4997744 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 74.0 6.72e-01 100.0% 92.2%
4981502 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 70.0 6.94e-01 95.6% 95.8%
3171302 2.1.1.119 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.79 72.0 5.55e-01 98.9% 73.2%
5070453 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 71.0 6.84e-01 96.7% 93.0%
3385523 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 67.0 6.25e-01 91.1% 80.0%
4179590 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.78 73.0 6.54e-01 100.0% 86.7%
3969377 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 56.0 6.15e-01 82.2% 90.5%
5020392 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.78 72.0 6.30e-01 100.0% 86.2%
3476052 2.1.1.142 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HROB 0.77 71.0 5.94e-01 100.0% 78.7%
4213053 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 67.0 6.61e-01 94.4% 91.6%
4045587 2.1.1.79 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecG_wedge 0.74 65.0 6.46e-01 95.6% 91.6%
5029083 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 55.0 4.56e-01 78.9% 98.0%
3230022 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 50.0 5.52e-01 81.1% 95.7%
4959053 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 49.0 5.44e-01 82.2% 97.1%
3243150 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 49.0 5.29e-01 93.3% 90.7%
1954221 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.61 46.0 4.94e-01 93.3% 96.0%
3712657 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.61 46.0 4.03e-01 82.2% 61.4%
4030635 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.51 40.0 3.03e-01 88.9% 78.4%
D3 medium residues 94-183
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17657.7 best DNA_pol3_finger 42.3 7.30e-11 76.7% 38.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f2bA07 6.10.140.1510 Special › Helix non-globular › Helix Hairpins › 0.74 57.0 5.85e-01 98.9% 84.9%
4i5lB01 1.10.238.230 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.64 37.0 3.61e-01 95.6% 50.0%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.63 45.0 4.59e-01 76.7% 84.4%
3ibyD02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 40.0 4.18e-01 77.8% 70.2%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 36.0 4.03e-01 91.1% 76.8%
7zviA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 43.0 3.94e-01 76.7% 68.9%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 42.0 3.72e-01 78.9% 82.7%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 32.0 3.26e-01 76.7% 56.3%
5my3A00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.53 44.0 3.49e-01 94.4% 46.1%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.53 38.0 3.78e-01 76.7% 92.6%
3akaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 42.0 3.58e-01 93.3% 95.7%
4g75A01 1.20.1440.280 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 39.0 3.33e-01 93.3% 48.4%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 37.0 3.43e-01 77.8% 67.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4522025 3584.1.1.1 alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.94 90.0 6.56e-01 100.0% 43.8%
4158759 3584.1.1.1 alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.93 88.0 6.29e-01 100.0% 41.3%
4411663 3584.1.1.1 alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.93 88.0 6.24e-01 100.0% 40.9%
4096085 3584.1.1.1 alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.92 82.0 5.98e-01 100.0% 40.0%
4093848 3584.1.1.1 alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.90 85.0 6.26e-01 100.0% 44.8%
4257959 3584.1.1.1 alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.87 79.0 6.04e-01 100.0% 45.8%
3969382 3584.1.1.0 alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain 0.84 78.0 5.80e-01 100.0% 47.1%
3603819 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.60 38.0 3.84e-01 76.7% 63.3%
3830809 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.57 41.0 3.79e-01 75.6% 80.0%
5025739 4953.1.1.2 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.57 38.0 4.12e-01 73.3% 82.7%
3259816 592.6.1.2 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › PF26582 0.56 43.0 4.05e-01 84.4% 72.7%
3641205 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 40.0 2.98e-01 80.0% 57.9%
4002689 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.52 43.0 4.23e-01 96.7% 86.3%
4454725 141.1.1.8 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.52 43.0 3.04e-01 92.2% 39.7%
3466815 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 4.08e-01 100.0% 77.8%
3996513 109.4.1.362 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 0.51 40.0 3.31e-01 85.6% 93.9%