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SRR1747057_scaffold_1_prodigal-single.1__X__X__00146
Bact-VirSRR1747057_scaffold_1_prodigal-single.1__X__X__00146
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-100
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bkbA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 30.0 | 3.68e-01 | 91.0% | 60.0% |
| 2vnuD04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 38.0 | 4.31e-01 | 85.0% | 73.4% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.65 | 29.0 | 3.75e-01 | 85.0% | 74.1% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.65 | 44.0 | 3.22e-01 | 71.0% | 55.8% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 29.0 | 4.01e-01 | 82.0% | 87.2% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.63 | 26.0 | 3.72e-01 | 84.0% | 82.6% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.62 | 30.0 | 4.01e-01 | 82.0% | 90.2% |
| 1a5yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.62 | 42.0 | 3.09e-01 | 71.0% | 53.9% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 28.0 | 3.79e-01 | 82.0% | 82.4% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 29.0 | 4.04e-01 | 71.0% | 94.2% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.59 | 28.0 | 3.82e-01 | 70.0% | 88.5% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 33.0 | 4.09e-01 | 79.0% | 95.2% |
| 1zuuA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 28.0 | 3.59e-01 | 82.0% | 87.5% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 29.0 | 3.58e-01 | 82.0% | 85.0% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 28.0 | 3.43e-01 | 82.0% | 78.1% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 28.0 | 3.48e-01 | 82.0% | 83.1% |
| 6vlfA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 28.0 | 3.51e-01 | 85.0% | 86.2% |
| 2fpeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 28.0 | 3.42e-01 | 82.0% | 80.6% |
| 8f5pE01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 38.0 | 2.58e-01 | 75.0% | 41.3% |
| 2evrA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 30.0 | 3.39e-01 | 85.0% | 74.3% |
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 28.0 | 3.44e-01 | 82.0% | 84.7% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 28.0 | 3.09e-01 | 82.0% | 63.3% |
| 1x6gA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 28.0 | 3.13e-01 | 84.0% | 64.2% |
| 3i35A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 27.0 | 3.35e-01 | 82.0% | 87.7% |
| 1pjxA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 35.0 | 2.51e-01 | 71.0% | 43.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4254219 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 27.0 | 3.37e-01 | 81.0% | 53.8% |
| 3253321 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 32.0 | 3.88e-01 | 96.0% | 64.6% |
| 1114686 | 4.1.1.8 ↗ | beta barrels › SH3 › SH3 › SH3 › IN_DBD_C | 0.71 | 29.0 | 3.81e-01 | 85.0% | 66.1% |
| 3616382 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.69 | 34.0 | 4.24e-01 | 76.0% | 78.3% |
| 4997767 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 31.0 | 4.61e-01 | 73.0% | 100.0% |
| 4967397 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.66 | 32.0 | 4.01e-01 | 72.0% | 73.8% |
| 3740511 | 2.1.1.89 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term | 0.65 | 36.0 | 3.82e-01 | 84.0% | 61.1% |
| 1140051 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.64 | 29.0 | 3.95e-01 | 82.0% | 83.7% |
| 5033075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 30.0 | 3.91e-01 | 71.0% | 80.0% |
| 3358753 | 4.1.1.381 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 | 0.64 | 29.0 | 2.42e-01 | 85.0% | 24.8% |
| 5013926 | 375.8.1.8 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › CPxCG_zf | 0.63 | 24.0 | 3.81e-01 | 76.0% | 100.0% |
| 5032251 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 30.0 | 4.15e-01 | 81.0% | 100.0% |
| 4994957 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 30.0 | 3.91e-01 | 72.0% | 83.6% |
| 3485486 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.59 | 33.0 | 4.19e-01 | 81.0% | 100.0% |
| 3410783 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.59 | 24.0 | 3.56e-01 | 72.0% | 86.7% |
| 3275404 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 30.0 | 3.78e-01 | 75.0% | 85.0% |
| 3261235 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.57 | 33.0 | 3.53e-01 | 79.0% | 67.1% |
| 3898672 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 29.0 | 3.44e-01 | 83.0% | 73.8% |
| 4031670 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.56 | 32.0 | 3.96e-01 | 79.0% | 93.3% |
| 3875218 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.55 | 33.0 | 4.01e-01 | 79.0% | 92.3% |
| 3209159 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 40.0 | 2.62e-01 | 75.0% | 30.1% |
| 3791430 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 28.0 | 3.61e-01 | 83.0% | 89.1% |
| 3597793 | 5094.1.1.0 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like | 0.55 | 30.0 | 2.75e-01 | 72.0% | 40.0% |
| 3914746 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.54 | 32.0 | 3.82e-01 | 79.0% | 85.7% |
| 3749194 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.54 | 30.0 | 3.60e-01 | 87.0% | 84.4% |
| 158943 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.54 | 28.0 | 3.16e-01 | 82.0% | 63.3% |
| 5024226 | 375.1.1.83 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB | 0.53 | 25.0 | 3.37e-01 | 79.0% | 93.3% |
| 3262675 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.53 | 47.0 | 3.23e-01 | 100.0% | 56.2% |
| 3517728 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.53 | 28.0 | 3.32e-01 | 74.0% | 74.3% |
| 3430287 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.53 | 38.0 | 2.72e-01 | 76.0% | 28.2% |
| 3373479 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 38.0 | 2.78e-01 | 75.0% | 35.3% |
| 3479037 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 28.0 | 3.06e-01 | 82.0% | 62.5% |
| 4962256 | 101.1.2.937 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25943 | 0.52 | 38.0 | 3.72e-01 | 77.0% | 87.3% |
| 4927852 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 31.0 | 3.28e-01 | 94.0% | 66.7% |
| 5032233 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 3.26e-01 | 100.0% | 58.3% |
| 5072324 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.51 | 33.0 | 3.41e-01 | 99.0% | 69.5% |
| 3741545 | 5.1.4.254 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N | 0.51 | 43.0 | 2.90e-01 | 95.0% | 94.6% |
| None | — | 0.50 | 37.0 | 2.76e-01 | 80.0% | 94.2% | |
| 4494810 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.50 | 28.0 | 3.05e-01 | 76.0% | 65.0% |
| 4433750 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.50 | 38.0 | 2.60e-01 | 83.0% | 78.8% |