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SRR1747057_scaffold_1_prodigal-single.1__X__X__00148

Bact-Vir

SRR1747057_scaffold_1_prodigal-single.1__X__X__00148

Identity

Kingdom:
phage

Quality

67.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 83-141
PDB
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.87 46.0 5.80e-01 88.1% 91.2%
2cjsC01 3.30.60.120 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.86 54.0 6.53e-01 74.6% 100.0%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.85 74.0 5.68e-01 100.0% 44.7%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.83 46.0 4.05e-01 72.9% 38.4%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.80 67.0 4.91e-01 100.0% 36.9%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 64.0 5.92e-01 100.0% 75.7%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.69 53.0 4.58e-01 86.4% 52.1%
2xzm500 3.30.1740.20 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 0.69 55.0 4.63e-01 86.4% 70.4%
4qf3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 52.0 5.28e-01 98.3% 91.2%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.63 52.0 4.91e-01 100.0% 76.4%
5tdrA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 48.0 4.55e-01 93.2% 71.4%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.61 54.0 4.59e-01 100.0% 66.0%
2ysmA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 49.0 4.04e-01 100.0% 47.7%
2miqA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 47.0 4.09e-01 100.0% 54.3%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 45.0 4.75e-01 81.4% 88.9%
3aslA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 50.0 4.85e-01 100.0% 85.3%
7v8fB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 50.0 4.26e-01 98.3% 62.0%
5vbfA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 38.0 2.50e-01 72.9% 72.2%
2fd4A00 3.30.40.110 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain 0.56 42.0 3.57e-01 84.7% 50.5%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 30.0 3.24e-01 100.0% 62.0%
1x31D00 3.30.2270.10 Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily 0.53 39.0 3.48e-01 81.4% 72.5%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 47.0 4.07e-01 100.0% 93.2%
1a7iA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.52 44.0 4.39e-01 98.3% 95.0%
3m1cA01 3.10.360.40 Alpha Beta › Roll › Antimicrobial Peptide, Beta-defensin 2; Chain A › 0.52 36.0 3.85e-01 74.6% 86.5%
2co8A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.52 45.0 4.08e-01 100.0% 73.2%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.51 33.0 3.16e-01 72.9% 54.2%
4bbqA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 43.0 4.10e-01 98.3% 85.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.53e-01 94.9% 72.8%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.50 41.0 3.78e-01 93.2% 94.9%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3830263 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.92 72.0 7.80e-01 98.3% 98.0%
4466003 376.1.3.44 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva 0.91 76.0 7.35e-01 100.0% 80.0%
3592068 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.89 68.0 6.88e-01 98.3% 81.0%
3554759 376.1.3.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 0.89 72.0 7.17e-01 100.0% 83.3%
3301384 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.89 76.0 7.83e-01 100.0% 98.2%
5042937 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.88 68.0 7.05e-01 100.0% 87.3%
3307915 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.88 75.0 7.30e-01 98.3% 84.6%
3606495 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.88 75.0 7.31e-01 100.0% 84.4%
3928741 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.87 51.0 4.42e-01 74.6% 41.2%
4985634 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.87 66.0 6.53e-01 93.2% 76.2%
5031996 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.87 75.0 7.81e-01 100.0% 98.2%
3745376 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.84 74.0 6.74e-01 100.0% 73.3%
3237892 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.84 75.0 7.45e-01 96.6% 93.3%
3849360 376.1.3.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.83 75.0 6.91e-01 100.0% 77.3%
3847015 192.7.1.79 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FYVE_2 0.83 69.0 6.94e-01 100.0% 86.7%
3962784 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 49.0 6.17e-01 79.7% 100.0%
3718357 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.83 60.0 6.76e-01 91.5% 100.0%
3716795 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.83 47.0 5.81e-01 74.6% 97.1%
3597770 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.82 62.0 6.71e-01 93.2% 96.0%
185882 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.81 62.0 6.61e-01 86.4% 92.2%
3728775 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.81 50.0 4.36e-01 78.0% 43.5%
3643916 375.1.1.235 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX 0.81 49.0 5.90e-01 83.1% 92.5%
4929513 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 52.0 6.12e-01 100.0% 97.5%
3938379 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.79 68.0 6.60e-01 100.0% 84.6%
3481685 376.1.3.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.79 63.0 6.79e-01 93.2% 100.0%
3717337 376.1.1.165 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FYVE 0.79 53.0 4.88e-01 89.8% 54.7%
3900403 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.79 64.0 6.59e-01 100.0% 92.7%
4948562 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 51.0 5.71e-01 89.8% 88.9%
3468455 376.1.3.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.78 49.0 5.76e-01 98.3% 95.0%
3510157 376.1.5.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger 0.78 54.0 6.17e-01 100.0% 95.6%
5065598 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.78 46.0 5.65e-01 81.4% 100.0%
3705738 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 62.0 6.19e-01 96.6% 85.0%
3863643 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 69.0 5.49e-01 100.0% 60.0%
5076094 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 54.0 5.37e-01 100.0% 73.3%
4488005 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.76 68.0 5.69e-01 100.0% 60.0%
3671431 376.1.1.40 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.75 46.0 5.11e-01 78.0% 80.0%
3260068 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.75 66.0 6.18e-01 94.9% 100.0%
3925918 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 57.0 6.09e-01 91.5% 96.0%
5066402 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 60.0 5.69e-01 86.4% 89.7%
5051696 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 62.0 6.36e-01 94.9% 98.2%
3211971 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 48.0 5.64e-01 98.3% 100.0%
3234939 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.73 67.0 6.49e-01 100.0% 96.9%
3700825 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.73 65.0 5.49e-01 100.0% 60.0%
4966035 376.1.3.98 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 0.73 53.0 5.35e-01 76.3% 76.7%
4997007 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 64.0 6.09e-01 100.0% 94.3%
3466575 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 61.0 5.99e-01 100.0% 86.2%
4951410 376.1.3.96 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF2180 0.72 64.0 6.10e-01 98.3% 98.6%
3703254 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.72 65.0 5.85e-01 100.0% 75.0%
3706927 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.71 66.0 6.60e-01 100.0% 98.3%
5080685 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 63.0 5.95e-01 100.0% 81.4%
3593722 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 66.0 6.62e-01 100.0% 98.3%
3714738 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.71 49.0 3.90e-01 83.1% 35.8%
3599075 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 61.0 6.32e-01 96.6% 100.0%
4946657 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 63.0 6.12e-01 98.3% 98.5%
5049527 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 58.0 5.78e-01 93.2% 100.0%
3512553 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.70 64.0 4.96e-01 100.0% 50.8%
5074886 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 64.0 6.01e-01 100.0% 82.9%
3309565 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.69 64.0 5.70e-01 100.0% 80.0%
3599415 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 62.0 5.87e-01 100.0% 82.9%
3702114 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 60.0 5.51e-01 94.9% 80.0%
3429713 386.1.1.212 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-AN1 0.69 45.0 5.17e-01 91.5% 100.0%
3607878 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 63.0 5.51e-01 100.0% 97.6%
3418503 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.68 63.0 5.78e-01 100.0% 80.0%
3274457 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.68 62.0 3.82e-01 100.0% 18.4%
3680961 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 53.0 5.59e-01 96.6% 100.0%
3230559 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 45.0 5.15e-01 94.9% 100.0%
3413884 376.1.5.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger › zf-AN1 0.68 50.0 4.83e-01 100.0% 70.8%
3747526 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.67 55.0 4.66e-01 91.5% 64.0%
3937349 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 54.0 3.40e-01 93.2% 23.9%
4965229 377.1.1.133 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7569 0.65 51.0 5.44e-01 100.0% 98.0%
3815866 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.65 58.0 5.82e-01 100.0% 100.0%
3995473 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 53.0 5.29e-01 100.0% 88.3%
4129609 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 53.0 5.19e-01 93.2% 100.0%
3738682 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 49.0 5.25e-01 100.0% 100.0%
3402915 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 48.0 4.05e-01 81.4% 73.0%
3443584 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 51.0 5.26e-01 100.0% 92.7%
3993634 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 49.0 5.23e-01 89.8% 100.0%
3242999 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 50.0 5.34e-01 94.9% 100.0%
3738336 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.63 49.0 5.10e-01 96.6% 94.5%
3525060 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.63 52.0 5.35e-01 96.6% 100.0%
3598893 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 53.0 5.36e-01 96.6% 98.3%
3624932 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 49.0 4.83e-01 94.9% 81.5%
2771913 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.62 49.0 4.84e-01 93.2% 80.6%
3418670 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.62 50.0 4.85e-01 100.0% 80.0%
3417508 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.61 47.0 5.02e-01 89.8% 100.0%
2117616 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.58 48.0 4.89e-01 96.6% 94.9%
3414021 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.57 49.0 4.55e-01 98.3% 76.0%
3482872 376.1.3.56 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PF30811 0.57 49.0 4.47e-01 98.3% 76.2%