←Back to structures
SRR1747057_scaffold_1_prodigal-single.1__X__X__00156
Bact-VirSRR1747057_scaffold_1_prodigal-single.1__X__X__00156
Identity
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-133
Domain cluster:
rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_100001521__D4-131
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tvoB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.71 | 26.0 | 3.84e-01 | 97.7% | 72.9% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.68 | 46.0 | 4.84e-01 | 76.9% | 76.7% |
| 3ep6B01 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.67 | 25.0 | 4.02e-01 | 95.4% | 100.0% |
| 1mhmB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.62 | 25.0 | 3.66e-01 | 96.2% | 85.2% |
| 2cdqA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 32.0 | 3.81e-01 | 96.2% | 79.8% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.58 | 25.0 | 3.21e-01 | 86.9% | 67.1% |
| 1dekA02 | 1.10.238.70 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.58 | 35.0 | 3.66e-01 | 88.5% | 64.8% |
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 30.0 | 3.84e-01 | 76.2% | 91.3% |
| 2j0wA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 31.0 | 3.79e-01 | 78.5% | 93.3% |
| 5ja2A01 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.55 | 47.0 | 3.78e-01 | 94.6% | 80.1% |
| 2q6iA02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.54 | 34.0 | 3.69e-01 | 77.7% | 77.7% |
| 4zxwB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 47.0 | 4.25e-01 | 93.8% | 82.0% |
| 6n8eA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 46.0 | 4.23e-01 | 93.8% | 81.4% |
| 1c8zA00 | 3.20.90.10 | Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A | 0.53 | 41.0 | 3.25e-01 | 81.5% | 91.3% |
| 3oovA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 37.0 | 3.50e-01 | 72.3% | 93.3% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 29.0 | 3.21e-01 | 73.8% | 67.3% |
| 1x9mA03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.62e-01 | 84.6% | 60.1% |
| 2pmbA01 | 3.30.1850.10 | Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like | 0.51 | 39.0 | 4.20e-01 | 80.0% | 97.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4964833 | 304.24.1.40 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › BAT | 0.88 | 22.0 | 3.41e-01 | 87.7% | 51.7% |
| 4773863 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.65 | 26.0 | 3.63e-01 | 96.2% | 76.7% |
| 4982514 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.64 | 38.0 | 4.73e-01 | 80.8% | 100.0% |
| 4107632 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.62 | 31.0 | 3.72e-01 | 73.8% | 70.0% |
| 5045322 | 331.6.1.0 ↗ | a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain | 0.60 | 40.0 | 4.12e-01 | 73.8% | 71.2% |
| 4986894 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.57 | 26.0 | 3.91e-01 | 96.2% | 96.7% |
| 3397015 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.55 | 36.0 | 3.50e-01 | 83.8% | 60.0% |
| 5012030 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.55 | 25.0 | 3.52e-01 | 94.6% | 85.7% |
| 4931728 | 2008.1.1.212 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27326 | 0.54 | 39.0 | 3.66e-01 | 76.2% | 94.1% |
| 156548 | 844.1.1.1 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub | 0.54 | 41.0 | 3.23e-01 | 79.2% | 88.3% |
| 4986893 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.54 | 26.0 | 3.49e-01 | 95.4% | 84.0% |
| 5047097 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.53 | 32.0 | 3.01e-01 | 76.9% | 46.7% |
| 4107946 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 41.0 | 3.43e-01 | 81.5% | 95.6% |
| 223786 | 304.48.1.16 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_4 | 0.53 | 46.0 | 3.44e-01 | 95.4% | 88.2% |
| 3564715 | 5054.1.1.29 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans+Na_trans_assoc | 0.52 | 42.0 | 2.44e-01 | 88.5% | 81.8% |
| 4927356 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.51 | 31.0 | 3.36e-01 | 84.6% | 72.4% |
| 4602760 | 3016.1.1.21 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen | 0.51 | 40.0 | 3.89e-01 | 89.2% | 75.9% |
| 3970617 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.51 | 25.0 | 3.35e-01 | 95.4% | 85.3% |
| 4945580 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.51 | 25.0 | 3.25e-01 | 95.4% | 81.0% |
| 5018195 | 2008.1.1.87 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C | 0.51 | 37.0 | 3.58e-01 | 75.4% | 97.9% |