←Back to structures
SRR1747057_scaffold_1_prodigal-single.1__X__X__00159
Bact-VirSRR1747057_scaffold_1_prodigal-single.1__X__X__00159
Identity
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 159-268
Domain cluster:
rep: IMGVR_UViG_3300018002_000020-3300018002-Ga0187868_10021255__D10-96
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13391.13 best | HNH_2 | 23.3 | 6.70e-05 | 49.1% | 86.6% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.64 | 40.0 | 4.64e-01 | 71.8% | 86.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039655 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.90 | 53.0 | 6.22e-01 | 72.7% | 81.2% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.88 | 50.0 | 6.08e-01 | 70.9% | 84.0% |
| 5080086 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.88 | 53.0 | 6.21e-01 | 71.8% | 83.7% |
| 3588377 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.85 | 60.0 | 6.28e-01 | 82.7% | 79.0% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.84 | 51.0 | 5.50e-01 | 79.1% | 71.3% |
| 4959590 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.84 | 56.0 | 6.30e-01 | 78.2% | 88.2% |
| 2036620 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.80 | 61.0 | 6.65e-01 | 86.4% | 94.6% |
| 5073918 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.78 | 53.0 | 5.71e-01 | 78.2% | 80.0% |
| 4974548 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 49.0 | 5.94e-01 | 70.0% | 96.1% |
| 2628026 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.63 | 53.0 | 4.31e-01 | 90.9% | 71.3% |
| 3196822 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.60 | 50.0 | 4.15e-01 | 87.3% | 99.4% |
D2
medium
residues 48-91
Domain cluster:
rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00037__D437-479
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4tmaJ00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.72 | 54.0 | 5.00e-01 | 100.0% | 63.2% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.71 | 54.0 | 5.46e-01 | 100.0% | 86.0% |
| 5yvxA00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.64 | 49.0 | 4.44e-01 | 84.1% | 70.0% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.59 | 42.0 | 3.74e-01 | 97.7% | 52.4% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 39.0 | 4.25e-01 | 100.0% | 91.2% |
| 5y20A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 44.0 | 4.22e-01 | 88.6% | 73.1% |
| 2lo3A01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 35.0 | 4.09e-01 | 90.9% | 93.1% |
| 2epcA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 35.0 | 3.89e-01 | 95.5% | 87.9% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.53 | 35.0 | 3.53e-01 | 70.5% | 89.1% |
| 3m7nA03 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.53 | 33.0 | 3.61e-01 | 77.3% | 76.5% |
| 2jl8102 | 3.30.160.850 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 40.0 | 4.07e-01 | 88.6% | 91.1% |
| 1e29A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.51 | 42.0 | 3.11e-01 | 100.0% | 59.3% |
| 1wjpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 31.0 | 3.47e-01 | 97.7% | 87.1% |
| 3w7tA04 | 3.30.1390.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30p/L7e | 0.51 | 33.0 | 3.41e-01 | 70.5% | 84.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3260588 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.77 | 61.0 | 5.95e-01 | 95.5% | 78.0% |
| 4031664 | 375.1.1.75 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2197 | 0.69 | 55.0 | 5.78e-01 | 88.6% | 100.0% |
| 3908035 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.65 | 39.0 | 2.78e-01 | 88.6% | 20.8% |
| 3324859 | 376.1.3.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CW | 0.65 | 48.0 | 4.56e-01 | 84.1% | 78.2% |
| 3521800 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 47.0 | 5.15e-01 | 84.1% | 100.0% |
| 3855306 | 386.1.1.49 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › XAF1_C | 0.63 | 41.0 | 4.58e-01 | 97.7% | 100.0% |
| 3438405 | 386.1.1.310 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1677 | 0.62 | 54.0 | 4.71e-01 | 100.0% | 84.1% |
| 3451619 | 102.1.1.117 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF1677 | 0.62 | 54.0 | 4.24e-01 | 100.0% | 63.2% |
| 3431630 | 103.5.1.8 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF1677 | 0.62 | 53.0 | 4.53e-01 | 100.0% | 89.3% |
| 3658113 | 857.1.1.16 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › DUF1677 | 0.61 | 53.0 | 4.60e-01 | 100.0% | 85.7% |
| 3450949 | 4207.1.2.63 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › DUF1677 | 0.61 | 52.0 | 4.05e-01 | 97.7% | 58.0% |
| 3322252 | 4952.1.1.3 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › DUF1677 | 0.61 | 52.0 | 4.55e-01 | 100.0% | 81.4% |
| 4001614 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 37.0 | 4.13e-01 | 88.6% | 90.0% |
| 3596494 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 44.0 | 4.74e-01 | 90.9% | 100.0% |
| 3611033 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.60 | 51.0 | 3.86e-01 | 100.0% | 84.3% |
| 3658922 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.60 | 51.0 | 4.15e-01 | 97.7% | 74.1% |
| 3362601 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.60 | 51.0 | 4.57e-01 | 100.0% | 90.8% |
| 3435613 | 3014.1.1.3 ↗ | alpha duplicates or obligate multimers › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › DUF1677 | 0.59 | 49.0 | 4.38e-01 | 95.5% | 87.7% |
| 3406438 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 33.0 | 3.96e-01 | 70.5% | 83.3% |
| 3509877 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 38.0 | 3.94e-01 | 90.9% | 72.5% |
| None | — | 0.58 | 36.0 | 3.36e-01 | 88.6% | 49.1% | |
| 3522423 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.58 | 35.0 | 2.90e-01 | 88.6% | 32.5% |
| 3864004 | 386.1.1.133 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 | 0.57 | 35.0 | 3.32e-01 | 88.6% | 49.1% |
| 4404543 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 36.0 | 3.76e-01 | 88.6% | 70.0% |
| 3583940 | 386.1.1.112 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2HC_2 | 0.57 | 38.0 | 4.20e-01 | 97.7% | 100.0% |
| 3411497 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.57 | 36.0 | 3.93e-01 | 93.2% | 93.3% |
| 3420417 | 102.1.1.117 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF1677 | 0.57 | 46.0 | 4.10e-01 | 93.2% | 95.4% |
| 3609284 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 43.0 | 4.17e-01 | 95.5% | 100.0% |
| 3883188 | 386.1.1.242 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_16 | 0.56 | 35.0 | 3.26e-01 | 88.6% | 49.1% |
| 3713969 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 41.0 | 4.25e-01 | 100.0% | 90.0% |
| 3819953 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.56 | 46.0 | 4.60e-01 | 100.0% | 97.8% |
| 3862387 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.55 | 35.0 | 2.91e-01 | 95.5% | 33.3% |
| 4331241 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 35.0 | 3.38e-01 | 90.9% | 56.0% |
| 3392575 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 38.0 | 4.04e-01 | 97.7% | 94.3% |
| 3198599 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 38.0 | 3.89e-01 | 97.7% | 74.4% |
| 4011311 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 36.0 | 3.93e-01 | 93.2% | 100.0% |
| 3393718 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 34.0 | 3.72e-01 | 88.6% | 93.3% |
| 5059659 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 42.0 | 4.33e-01 | 95.5% | 100.0% |
| 3596419 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.53 | 38.0 | 3.85e-01 | 95.5% | 92.5% |
| 3800049 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 35.0 | 3.68e-01 | 95.5% | 85.7% |
| 3394581 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 36.0 | 3.73e-01 | 97.7% | 82.5% |
| 3752890 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 33.0 | 3.29e-01 | 88.6% | 60.0% |
| 3459576 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 36.0 | 3.62e-01 | 100.0% | 73.3% |
| 3898158 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 40.0 | 3.56e-01 | 97.7% | 57.1% |
| 3392084 | 386.1.1.25 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_5 | 0.52 | 34.0 | 3.57e-01 | 95.5% | 100.0% |
| 3599731 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 34.0 | 2.30e-01 | 95.5% | 16.3% |
| 3482695 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 34.0 | 3.65e-01 | 97.7% | 100.0% |
| 4068274 | 4076.1.1.1 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N | 0.52 | 34.0 | 3.30e-01 | 70.5% | 65.5% |
| 3794387 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 35.0 | 3.73e-01 | 95.5% | 91.4% |
| 3517096 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 35.0 | 3.51e-01 | 97.7% | 73.3% |
| 3393045 | 386.1.1.24 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 | 0.51 | 32.0 | 3.48e-01 | 93.2% | 100.0% |
| 3338240 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.51 | 33.0 | 3.54e-01 | 97.7% | 100.0% |