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SRR1747057_scaffold_1_prodigal-single.1__X__X__00162

Bact-Vir

SRR1747057_scaffold_1_prodigal-single.1__X__X__00162

Identity

Kingdom:
phage

Quality

80.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-108
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b3qB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 35.0 3.44e-01 71.9% 48.5%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.51 29.0 3.01e-01 95.3% 58.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4278911 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.68 39.0 4.28e-01 93.8% 70.0%
4112791 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.64 37.0 4.05e-01 93.8% 70.0%
4064862 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.62 34.0 3.67e-01 95.3% 61.8%
3995797 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.55 37.0 3.72e-01 100.0% 69.2%
3545762 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 26.0 2.99e-01 93.8% 55.6%
4013052 376.1.6.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.53 42.0 4.21e-01 90.6% 86.2%
3235494 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.51 33.0 3.47e-01 92.2% 72.7%
3826091 376.1.4.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.51 28.0 3.19e-01 89.1% 73.3%