←Back to structures
SRR1747057_scaffold_1_prodigal-single.1__X__X__00204
Bact-VirSRR1747057_scaffold_1_prodigal-single.1__X__X__00204
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-81
Domain cluster:
rep: NC_041866.1__YP_009593404.1__FDG83_gp75__00075__D3-57
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07927.18 best | HicA_toxin | 35.8 | 1.00e-08 | 79.2% | 96.5% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whzA00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.90 | 81.0 | 8.28e-01 | 97.2% | 100.0% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.89 | 69.0 | 7.64e-01 | 83.3% | 100.0% |
| 4wh5A00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.69 | 48.0 | 3.70e-01 | 72.2% | 71.5% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.67 | 54.0 | 4.83e-01 | 90.3% | 89.5% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.65 | 48.0 | 4.35e-01 | 77.8% | 82.3% |
| 1r9cA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.62 | 52.0 | 4.35e-01 | 91.7% | 76.8% |
| 1xqaA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.62 | 51.0 | 4.46e-01 | 90.3% | 82.7% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.61 | 52.0 | 4.54e-01 | 95.8% | 91.7% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 42.0 | 3.96e-01 | 77.8% | 87.9% |
| 2x3lA01 | 3.90.1150.150 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.58 | 47.0 | 4.19e-01 | 88.9% | 77.1% |
| 3ottB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 39.0 | 2.62e-01 | 75.0% | 21.5% |
| 2douB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 41.0 | 3.36e-01 | 81.9% | 56.4% |
| 7o06C01 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.56 | 38.0 | 3.50e-01 | 88.9% | 54.9% |
| 3e82E02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 45.0 | 3.37e-01 | 94.4% | 77.5% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 36.0 | 3.65e-01 | 79.2% | 67.1% |
| 1yr1A00 | 3.40.50.10960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 3.67e-01 | 90.3% | 52.9% |
| 5twbA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 43.0 | 3.17e-01 | 91.7% | 86.4% |
| 4v1ap00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 41.0 | 3.80e-01 | 84.7% | 96.9% |
| 5fmgG00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 44.0 | 3.23e-01 | 97.2% | 70.8% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 36.0 | 3.90e-01 | 77.8% | 89.7% |
| 1b8gA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 42.0 | 3.32e-01 | 91.7% | 84.1% |
| 2re3A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.51 | 36.0 | 3.66e-01 | 72.2% | 84.3% |
| 3oyyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 37.0 | 3.95e-01 | 76.4% | 87.7% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.51 | 41.0 | 3.02e-01 | 94.4% | 79.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3257938 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.94 | 75.0 | 8.26e-01 | 83.3% | 100.0% |
| 5055849 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.92 | 79.0 | 8.31e-01 | 93.1% | 100.0% |
| 5002760 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.91 | 83.0 | 8.43e-01 | 97.2% | 100.0% |
| 4966262 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.90 | 77.0 | 8.15e-01 | 91.7% | 100.0% |
| 5027607 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.90 | 84.0 | 8.27e-01 | 98.6% | 96.0% |
| 5829 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.90 | 81.0 | 8.23e-01 | 97.2% | 98.6% |
| 4947543 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.89 | 83.0 | 8.29e-01 | 100.0% | 97.3% |
| 2330317 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.89 | 69.0 | 7.64e-01 | 83.3% | 100.0% |
| 5075316 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.85 | 75.0 | 7.64e-01 | 95.8% | 100.0% |
| 4999507 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.83 | 74.0 | 7.49e-01 | 95.8% | 100.0% |
| 5042295 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.71 | 50.0 | 4.60e-01 | 72.2% | 91.1% |
| 3965099 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.67 | 55.0 | 4.86e-01 | 90.3% | 88.6% |
| 4992199 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.62 | 52.0 | 4.91e-01 | 95.8% | 82.2% |
| 4011095 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 41.0 | 2.59e-01 | 76.4% | 26.7% |
| 3605683 | 3609.1.1.0 ↗ | alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain | 0.55 | 39.0 | 3.89e-01 | 100.0% | 72.0% |
| 4944335 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 47.0 | 4.42e-01 | 100.0% | 78.5% |
| 3659251 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 38.0 | 2.61e-01 | 76.4% | 20.7% |
| 3970344 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.52 | 39.0 | 3.31e-01 | 79.2% | 75.0% |
| 3793656 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.52 | 42.0 | 3.43e-01 | 91.7% | 82.8% |
| 4285716 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 34.0 | 3.94e-01 | 75.0% | 100.0% |
| 3935842 | 2485.1.1.19 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 | 0.50 | 38.0 | 3.29e-01 | 84.7% | 76.0% |
| 4165766 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.50 | 35.0 | 3.73e-01 | 72.2% | 86.7% |
| 3685043 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.50 | 33.0 | 2.54e-01 | 84.7% | 26.3% |