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SRR1747057_scaffold_1_prodigal-single.1__X__X__00215

Bact-Vir

SRR1747057_scaffold_1_prodigal-single.1__X__X__00215

Identity

Kingdom:
phage

Quality

90.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-75
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.21e-01 100.0% 70.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.31e-01 100.0% 77.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 5.03e-01 100.0% 69.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 46.0 4.96e-01 100.0% 84.6%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 3.95e-01 100.0% 39.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 46.0 4.97e-01 98.4% 100.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.41e-01 100.0% 91.8%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 5.01e-01 100.0% 78.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.85e-01 100.0% 82.3%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 4.97e-01 100.0% 88.7%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.60e-01 100.0% 85.7%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 5.04e-01 100.0% 93.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.36e-01 100.0% 73.8%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.91e-01 100.0% 93.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.80e-01 100.0% 91.5%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.68e-01 100.0% 84.4%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.83e-01 100.0% 85.1%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.87e-01 100.0% 94.8%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.63e-01 100.0% 94.3%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.57e-01 100.0% 68.9%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 51.0 4.91e-01 100.0% 87.8%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.62e-01 100.0% 94.7%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 39.0 4.20e-01 100.0% 83.3%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.61e-01 100.0% 79.5%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.49e-01 100.0% 77.9%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.57 48.0 4.37e-01 100.0% 81.1%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 4.22e-01 75.0% 92.9%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.34e-01 100.0% 94.8%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.23e-01 100.0% 98.2%
3gwfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.88e-01 95.3% 46.4%
2xzmR01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.80e-01 95.3% 19.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.90e-01 100.0% 77.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941620 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.38e-01 100.0% 80.0%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.73 54.0 5.08e-01 100.0% 66.7%
4069543 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 52.0 4.98e-01 100.0% 65.3%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.16e-01 100.0% 73.8%
5058103 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.03e-01 100.0% 70.6%
4484893 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.08e-01 100.0% 73.8%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.71 50.0 4.92e-01 100.0% 68.6%
5029655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.21e-01 100.0% 80.0%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.71 49.0 3.58e-01 100.0% 27.9%
3251559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.44e-01 100.0% 94.0%
3615426 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.70 61.0 4.54e-01 100.0% 40.0%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 4.73e-01 100.0% 65.3%
5069062 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.69 49.0 5.04e-01 100.0% 81.4%
3714156 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.46e-01 100.0% 60.0%
4621153 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.88e-01 100.0% 83.3%
3593222 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.04e-01 100.0% 53.7%
3482868 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 50.0 5.28e-01 100.0% 98.2%
3987601 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 46.0 5.01e-01 100.0% 98.0%
3172122 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 51.0 5.24e-01 100.0% 96.7%
4981041 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.62 42.0 4.65e-01 93.8% 92.0%
4207556 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.61 53.0 5.17e-01 100.0% 94.3%
3879172 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 49.0 4.90e-01 100.0% 87.7%
4012002 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.75e-01 100.0% 82.9%
3700860 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.60 52.0 3.26e-01 100.0% 32.1%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 54.0 5.12e-01 100.0% 86.7%
3932586 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.59 47.0 3.60e-01 96.9% 35.6%
3923839 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.66e-01 89.1% 95.7%
4614716 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.59 50.0 4.96e-01 100.0% 97.1%
3593299 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 52.0 3.23e-01 100.0% 31.5%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.22e-01 100.0% 63.3%
4058768 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.03e-01 95.3% 96.2%
3477037 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 45.0 4.43e-01 100.0% 81.4%
3763497 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 47.0 4.51e-01 100.0% 82.7%
3481726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.33e-01 100.0% 90.0%
3712451 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.27e-01 100.0% 38.4%
3674165 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.56 48.0 3.21e-01 100.0% 31.5%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 48.0 4.19e-01 100.0% 67.0%
4105348 4.1.1.394 beta barrels › SH3 › SH3 › SH3 › SlpA 0.55 46.0 4.65e-01 100.0% 98.4%
3498371 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 46.0 2.81e-01 96.9% 23.3%
4123449 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.54 47.0 4.34e-01 98.4% 74.1%
3391656 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.54 47.0 3.03e-01 100.0% 25.8%
985799 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.54 43.0 3.47e-01 95.3% 91.5%
3898170 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 44.0 4.30e-01 100.0% 88.0%
4875445 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.52 42.0 3.35e-01 95.3% 86.1%
4615629 4.1.1.449 beta barrels › SH3 › SH3 › SH3 › DUF1292 0.52 45.0 4.10e-01 100.0% 72.9%
3403184 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.52 43.0 3.81e-01 95.3% 79.0%
4996783 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.52 42.0 2.72e-01 96.9% 33.0%
3715297 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.52 44.0 3.91e-01 95.3% 82.1%
3349069 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.52 42.0 2.89e-01 95.3% 62.5%
3724929 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.52 42.0 2.82e-01 95.3% 44.0%
3959289 2003.1.2.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8, Pyr_redox_3 0.51 42.0 3.08e-01 95.3% 67.9%
3204489 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 41.0 2.75e-01 95.3% 45.7%
3242411 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.51 43.0 3.69e-01 100.0% 81.8%
3722547 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 40.0 2.75e-01 95.3% 45.7%
3284430 2003.1.2.91 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, NAD_binding_8, Pyr_redox_3 0.50 40.0 2.50e-01 95.3% 27.0%
D2 medium residues 81-125
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ql2B00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.69 45.0 4.23e-01 75.6% 52.5%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.62 48.0 3.07e-01 86.7% 52.0%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.62 47.0 3.31e-01 84.4% 69.9%
2ivnA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 41.0 2.94e-01 84.4% 71.3%
1onfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.12e-01 100.0% 88.7%
6t4hA03 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.55 45.0 3.05e-01 93.3% 90.7%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.07e-01 100.0% 88.8%
4u7bA01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 42.0 4.10e-01 84.4% 74.5%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.44e-01 88.9% 48.3%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.53 45.0 3.38e-01 100.0% 48.3%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 40.0 4.04e-01 97.8% 85.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4051544 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.68 55.0 5.10e-01 100.0% 70.0%
4937605 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.67 55.0 4.75e-01 95.6% 88.0%
4948719 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.66 58.0 4.47e-01 100.0% 51.0%
4408493 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.66 53.0 5.16e-01 100.0% 84.0%
5037584 601.7.1.9 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas_Cas02710 0.63 47.0 3.19e-01 82.2% 81.1%
5064117 5051.1.1.3 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF 0.62 54.0 3.06e-01 100.0% 66.8%
3511721 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.58 42.0 4.30e-01 100.0% 82.2%
4223595 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.55 45.0 4.31e-01 100.0% 80.0%
3879529 1.1.1.1 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.55 44.0 2.61e-01 93.3% 39.5%
4947640 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.52 44.0 2.81e-01 100.0% 32.5%