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SRR1747057_scaffold_1_prodigal-single.1__X__X__00216

Bact-Vir

SRR1747057_scaffold_1_prodigal-single.1__X__X__00216

Identity

Kingdom:
phage

Quality

92.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-76
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.65 50.0 3.35e-01 82.4% 49.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.11e-01 100.0% 50.0%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 47.0 4.79e-01 89.7% 79.4%
1ktgA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 41.0 3.33e-01 73.5% 59.1%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 46.0 3.92e-01 88.2% 92.2%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 48.0 3.38e-01 100.0% 35.0%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 3.96e-01 89.7% 85.4%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.19e-01 80.9% 89.5%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 43.0 3.51e-01 100.0% 46.0%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.36e-01 98.5% 51.5%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.52 41.0 3.16e-01 100.0% 37.7%
7w6yA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 40.0 3.78e-01 82.4% 90.1%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.52 36.0 2.66e-01 73.5% 75.8%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 38.0 3.52e-01 79.4% 82.6%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 43.0 3.50e-01 100.0% 47.2%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 43.0 3.56e-01 98.5% 80.9%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2157301 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.73 55.0 5.45e-01 100.0% 75.3%
5041400 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 46.0 5.26e-01 98.5% 100.0%
3439789 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 61.0 4.47e-01 100.0% 48.6%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.65 48.0 4.11e-01 100.0% 50.0%
3757490 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.64 56.0 5.05e-01 100.0% 73.7%
3342228 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.64 56.0 4.24e-01 100.0% 77.1%
3423907 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.63 56.0 4.22e-01 100.0% 77.0%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.24e-01 100.0% 53.6%
3447797 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.62 55.0 4.28e-01 100.0% 74.0%
5077163 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.62 47.0 3.74e-01 80.9% 79.3%
3496857 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 3.98e-01 79.4% 81.0%
3512351 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.62 41.0 3.73e-01 98.5% 49.5%
3646876 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.62 48.0 4.29e-01 83.8% 65.3%
3651210 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 41.0 4.31e-01 100.0% 78.3%
5059673 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 52.0 4.49e-01 91.2% 83.0%
5014602 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.60 45.0 3.68e-01 80.9% 81.5%
1144777 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.60 46.0 4.05e-01 83.8% 59.6%
4930785 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 50.0 4.22e-01 91.2% 76.4%
4971602 316.1.1.45 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF4269 0.59 50.0 3.90e-01 94.1% 58.1%
5046254 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 38.0 4.40e-01 95.6% 100.0%
3925915 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.58 39.0 4.31e-01 95.6% 94.0%
3456692 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.58 38.0 4.07e-01 100.0% 78.0%
5019817 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 48.0 4.10e-01 91.2% 76.4%
4012616 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.58 48.0 4.03e-01 100.0% 53.9%
3640971 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 47.0 3.65e-01 91.2% 63.2%
4029736 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.57 32.0 2.37e-01 98.5% 18.4%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.15e-01 100.0% 67.1%
5080580 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 4.09e-01 91.2% 83.8%
5031992 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.57 48.0 3.70e-01 94.1% 55.5%
4985567 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 4.21e-01 91.2% 88.4%
5033499 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.57 49.0 4.23e-01 94.1% 82.9%
5068666 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 50.0 4.22e-01 95.6% 80.0%
5076310 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.57 47.0 3.69e-01 94.1% 53.5%
5001821 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.57 47.0 4.07e-01 91.2% 81.9%
3341337 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.57 48.0 3.70e-01 100.0% 80.6%
4602887 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 4.57e-01 89.7% 90.5%
3932975 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.56 43.0 3.92e-01 83.8% 62.2%
4968170 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 46.0 4.00e-01 91.2% 79.0%
1558581 4182.2.1.1 beta sandwiches › Agglutinin HPA-like › CofB C-terminal domain › CofB C-terminal domain › CofB_C 0.55 40.0 3.17e-01 80.9% 75.8%
4667221 2003.1.2.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.55 48.0 3.46e-01 97.1% 56.7%
4169235 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 40.0 3.37e-01 77.9% 94.3%
3411213 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.63e-01 100.0% 45.0%
4043451 3826.1.1.22 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › UPF0236 0.55 41.0 2.98e-01 80.9% 66.2%
4255362 3826.1.1.22 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › UPF0236 0.54 41.0 3.30e-01 80.9% 54.1%
4958890 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.54 41.0 3.88e-01 100.0% 67.5%
3572103 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.54 45.0 3.66e-01 100.0% 48.1%
3520847 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.53 46.0 4.41e-01 100.0% 85.0%
3993718 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.53 46.0 4.52e-01 100.0% 90.7%
5072187 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.53 47.0 2.82e-01 95.6% 23.6%
3231216 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 36.0 4.06e-01 100.0% 94.0%
2794152 2.2.1.0 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.53 44.0 3.62e-01 92.6% 79.8%
3968213 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 37.0 2.46e-01 75.0% 24.5%
3909292 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.53 45.0 3.34e-01 100.0% 54.9%
4984069 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.53 45.0 3.58e-01 100.0% 46.4%
3606476 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 38.0 4.17e-01 75.0% 92.7%
5018717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 4.22e-01 95.6% 100.0%
5065077 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 45.0 3.62e-01 100.0% 47.5%
3295586 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.52 42.0 3.24e-01 91.2% 59.4%
5044346 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 42.0 3.58e-01 88.2% 65.5%
3323226 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 42.0 3.33e-01 92.6% 66.0%
5010111 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 43.0 3.49e-01 91.2% 92.0%
4087539 243.3.1.52 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.51 45.0 4.07e-01 100.0% 71.6%
3287971 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.51 39.0 2.67e-01 89.7% 83.7%
3472035 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 42.0 3.31e-01 92.6% 61.3%
D2 high residues 83-127
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cb2B01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.70 59.0 3.72e-01 100.0% 84.9%
1vm7B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.67 46.0 2.87e-01 77.8% 18.2%
2gupA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 50.0 3.28e-01 88.9% 44.0%
4ciuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 50.0 3.38e-01 97.8% 81.8%
1cy9A01 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.59 48.0 3.74e-01 100.0% 90.7%
1zbuB01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.58 43.0 3.70e-01 86.7% 48.6%
3f0cA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 39.0 3.86e-01 80.0% 65.3%
6pw7A01 1.10.238.180 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.57 40.0 3.49e-01 75.6% 56.0%
1jeqA05 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.57 42.0 4.08e-01 86.7% 70.6%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 39.0 3.33e-01 77.8% 42.0%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.54 43.0 3.86e-01 95.6% 97.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589265 101.1.2.145 alpha arrays › HTH › HTH › winged helix domain › HHH_4 0.66 49.0 3.96e-01 86.7% 41.1%
3207125 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.66 44.0 4.89e-01 84.4% 91.4%
3718640 3187.1.1.0 alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein 0.62 48.0 3.51e-01 86.7% 33.1%
3331958 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.61 45.0 3.63e-01 82.2% 46.3%
2890674 132.1.1.1 alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.61 46.0 3.64e-01 84.4% 53.5%
3219476 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 39.0 3.98e-01 82.2% 66.7%
3328225 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.59 43.0 4.15e-01 86.7% 67.9%
3444757 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.57 41.0 3.97e-01 86.7% 68.5%
4890692 325.1.4.4 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Nicotinate/Quinolinate PRTase N-terminal domain-like › NAMPT_N 0.56 43.0 2.91e-01 84.4% 79.9%
4009282 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 42.0 3.67e-01 100.0% 60.0%