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SRR1747057_scaffold_1_prodigal-single.1__X__X__00232

Bact-Vir

SRR1747057_scaffold_1_prodigal-single.1__X__X__00232

Identity

Kingdom:
phage

Quality

93.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-40
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2awnC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 56.0 3.52e-01 92.5% 31.7%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 40.0 4.05e-01 97.5% 61.5%
3b0dB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.64 45.0 3.49e-01 85.0% 32.6%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.60 49.0 3.23e-01 92.5% 46.4%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.58 49.0 3.43e-01 100.0% 35.9%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.58 44.0 3.07e-01 82.5% 28.0%
2f76X00 1.10.150.490 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Retroviral GAG p10 protein 0.52 41.0 3.22e-01 95.0% 55.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3445114 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.61 51.0 4.03e-01 100.0% 75.6%
4932304 309.1.1.15 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › DEAD_assoc 0.50 40.0 2.69e-01 95.0% 21.7%