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SRR1747057_scaffold_1_prodigal-single.1__X__X__00255
Bact-VirSRR1747057_scaffold_1_prodigal-single.1__X__X__00255
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-68
Domain cluster:
rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00359__D2-57
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3prbA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.72 | 46.0 | 5.50e-01 | 90.8% | 97.7% |
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.69 | 52.0 | 5.36e-01 | 98.5% | 82.5% |
| 1feuA01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.69 | 59.0 | 5.35e-01 | 98.5% | 74.7% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 62.0 | 4.60e-01 | 100.0% | 76.1% |
| 2bw2A01 | 3.10.20.420 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain | 0.65 | 49.0 | 5.25e-01 | 100.0% | 94.5% |
| 3aiiA02 | 2.40.240.100 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.64 | 48.0 | 4.85e-01 | 100.0% | 82.8% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.64 | 36.0 | 4.07e-01 | 73.8% | 72.5% |
| 2j3vA02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.63 | 52.0 | 3.60e-01 | 89.2% | 62.3% |
| 2kvzA00 | 3.10.20.320 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) | 0.63 | 55.0 | 5.01e-01 | 100.0% | 74.1% |
| 2b1xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 55.0 | 4.11e-01 | 100.0% | 72.5% |
| 3fcmA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 52.0 | 3.84e-01 | 100.0% | 52.8% |
| 7sbiB01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 52.0 | 5.01e-01 | 100.0% | 100.0% |
| 3gg6A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 52.0 | 4.08e-01 | 100.0% | 56.2% |
| 3wx7A02 | 2.10.10.90 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.59 | 38.0 | 3.29e-01 | 76.9% | 44.2% |
| 2rgqB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 52.0 | 4.12e-01 | 100.0% | 68.4% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 51.0 | 3.96e-01 | 100.0% | 71.6% |
| 2w4eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 51.0 | 4.08e-01 | 100.0% | 62.8% |
| 2zo4A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 45.0 | 3.04e-01 | 84.6% | 59.9% |
| 2ckfB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 51.0 | 3.80e-01 | 100.0% | 70.6% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 51.0 | 4.15e-01 | 96.9% | 72.5% |
| 1se9A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 50.0 | 4.40e-01 | 100.0% | 84.2% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 50.0 | 4.06e-01 | 100.0% | 69.6% |
| 3rt3B01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 49.0 | 4.76e-01 | 100.0% | 97.3% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 40.0 | 2.80e-01 | 81.5% | 20.4% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.55 | 47.0 | 4.45e-01 | 98.5% | 78.5% |
| 1wghA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 46.0 | 4.36e-01 | 98.5% | 97.6% |
| 1gg3A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 47.0 | 4.48e-01 | 100.0% | 98.7% |
| 3nv0B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 46.0 | 3.77e-01 | 100.0% | 70.6% |
| 4ad9A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 42.0 | 3.01e-01 | 84.6% | 60.3% |
| 2al3A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 46.0 | 4.42e-01 | 98.5% | 93.4% |
| 4k3bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.54 | 45.0 | 4.23e-01 | 100.0% | 92.9% |
| 2kdvA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 46.0 | 3.53e-01 | 100.0% | 62.8% |
| 2hoeA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 41.0 | 3.24e-01 | 84.6% | 71.7% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.54 | 44.0 | 4.18e-01 | 100.0% | 98.8% |
| 1v6eA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 45.0 | 4.28e-01 | 100.0% | 98.8% |
| 5wcmA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 40.0 | 2.73e-01 | 84.6% | 49.8% |
| 2oluA01 | 3.90.1310.20 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.53 | 36.0 | 3.15e-01 | 72.3% | 81.8% |
| 2gbmA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 43.0 | 4.14e-01 | 98.5% | 97.5% |
| 1b9rA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.52 | 44.0 | 3.86e-01 | 100.0% | 99.0% |
| 2lrwA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 43.0 | 4.12e-01 | 100.0% | 93.6% |
| 1ryjA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 44.0 | 4.28e-01 | 100.0% | 87.1% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.51 | 40.0 | 3.21e-01 | 90.8% | 60.4% |
| 2b9kA00 | 2.20.20.70 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.50 | 32.0 | 3.52e-01 | 90.8% | 91.5% |
| 2fe3A02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.50 | 37.0 | 3.87e-01 | 100.0% | 89.5% |
| 1xm8A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 39.0 | 2.66e-01 | 86.2% | 43.3% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5015084 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.83 | 65.0 | 6.80e-01 | 100.0% | 90.0% |
| 4936305 | 375.1.1.332 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › WH_Lhr | 0.81 | 62.0 | 6.72e-01 | 98.5% | 94.5% |
| 4968500 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.80 | 61.0 | 6.21e-01 | 100.0% | 82.5% |
| 4964644 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.80 | 60.0 | 6.47e-01 | 100.0% | 94.5% |
| 4956395 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.79 | 60.0 | 6.53e-01 | 98.5% | 94.5% |
| 4992034 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.78 | 59.0 | 6.39e-01 | 100.0% | 94.5% |
| 5015989 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.78 | 58.0 | 6.25e-01 | 98.5% | 92.7% |
| 5042402 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.78 | 66.0 | 6.85e-01 | 100.0% | 98.3% |
| 5045021 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.78 | 62.0 | 6.45e-01 | 100.0% | 91.7% |
| 3802388 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.76 | 69.0 | 6.30e-01 | 100.0% | 77.1% |
| 4966140 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.75 | 60.0 | 5.28e-01 | 100.0% | 58.9% |
| 3933549 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.75 | 44.0 | 2.70e-01 | 70.8% | 10.6% |
| 4141436 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.75 | 58.0 | 5.41e-01 | 100.0% | 67.5% |
| 4398468 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.74 | 58.0 | 5.53e-01 | 100.0% | 72.0% |
| 4586640 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.73 | 56.0 | 5.52e-01 | 100.0% | 77.1% |
| 3234134 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.71 | 42.0 | 2.66e-01 | 70.8% | 11.9% |
| 5028192 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.71 | 55.0 | 5.48e-01 | 100.0% | 79.4% |
| 4059008 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.70 | 53.0 | 5.39e-01 | 100.0% | 81.5% |
| 5022325 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.70 | 63.0 | 5.45e-01 | 100.0% | 72.0% |
| 3224319 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.69 | 33.0 | 3.28e-01 | 96.9% | 41.4% |
| 5042815 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.69 | 63.0 | 5.83e-01 | 100.0% | 85.0% |
| 5013928 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.68 | 60.0 | 5.53e-01 | 100.0% | 81.2% |
| 4933883 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.66 | 44.0 | 4.91e-01 | 90.8% | 88.0% |
| 4947785 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.66 | 52.0 | 5.19e-01 | 100.0% | 84.1% |
| 3619978 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.65 | 42.0 | 2.64e-01 | 80.0% | 12.8% |
| 5040460 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.63 | 48.0 | 4.64e-01 | 100.0% | 73.0% |
| 4995785 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.63 | 48.0 | 5.10e-01 | 95.4% | 98.2% |
| 3619212 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.62 | 48.0 | 3.13e-01 | 84.6% | 20.0% |
| 4954981 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.59 | 53.0 | 3.89e-01 | 100.0% | 50.6% |
| 4939611 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.59 | 52.0 | 4.05e-01 | 100.0% | 63.4% |
| 3513108 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.59 | 51.0 | 4.11e-01 | 100.0% | 70.0% |
| 3741071 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.58 | 50.0 | 3.99e-01 | 100.0% | 65.7% |
| 3502375 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.55 | 35.0 | 4.21e-01 | 96.9% | 95.6% |
| 4327607 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.55 | 46.0 | 3.47e-01 | 100.0% | 54.4% |
| 1266295 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.54 | 42.0 | 2.77e-01 | 84.6% | 43.2% |
| 3617845 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.54 | 41.0 | 2.74e-01 | 84.6% | 40.7% |
| 4421652 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.53 | 45.0 | 3.41e-01 | 100.0% | 54.3% |
| 4348495 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 42.0 | 2.87e-01 | 92.3% | 87.0% |
| 5031749 | 3114.1.1.0 ↗ | beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain | 0.51 | 44.0 | 4.25e-01 | 100.0% | 98.7% |
| 3797433 | 60.1.2.0 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain | 0.50 | 42.0 | 2.80e-01 | 100.0% | 66.5% |
| 4991704 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 44.0 | 3.92e-01 | 100.0% | 70.0% |